-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 04 Dec 2016 21:33:55 -0500 Source: ncbi-tools6 Binary: libncbi6 libncbi6-dev ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6b libvibrant6-dev Architecture: source Version: 6.1.20160908-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <ucko@debian.org> Description: blast2 - transitional package to ncbi-blast+-legacy libncbi6 - NCBI libraries for biology applications libncbi6-dev - NCBI libraries for biology applications (development files) libvibrant6-dev - NCBI libraries for graphic biology applications (development file libvibrant6b - NCBI libraries for graphic biology applications ncbi-data - Platform-independent data for the NCBI toolkit ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities) ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities) Closes: 821075 846477 Changes: ncbi-tools6 (6.1.20160908-1) unstable; urgency=medium . [ Andreas Tille ] * (Final) new upstream release, incorporating most Debian changes, adding HTTPS support, and desupporting legacy BLAST. (Closes: #846477, #821075.) * cme fix dpkg-control * drop -dbg packages since these will be created automatically * Fixed watch file (thanks to Eriberto <eriberto@eriberto.pro.br>) * DEP5 . [ Aaron M. Ucko ] * Reinstate direct upstream changes lost in merge. * Ensure that apps that could potentially hit the network can use HTTPS. (Don't bother with anything that only supports the old Entrez1 service.) * Allow Entrez2 over HTTPS by switching to the Entrez2s service, making HTTPS connections by default, and allowing HTTPS POST redirections from raw IP addresses (which NCBI's certificates don't cover). * Let GCC take care of setting __DATE__ and __TIME__ per SOURCE_DATE_EPOCH. * api/sqnutil3.c: Substitute strcpy for sprintf with no extra arguments, which our hardening flags disallow. * connect/ncbi_gnutls.c: Suppress strict version check. * debian/*.symbols: Update for new release. * debian/{blast2.*,control,rules}, make/makedemo.unx: Turn blast2 into an architecture-independent transitional package for ncbi-blast+-legacy. (Retire blastcl3, which is obsolete.) * debian/{compat,control}: Advance to Debhelper compat level 10. * debian/control: Drop unversioned B-D-I on dpkg-dev left behind by cme. * debian/{control,rules}: - Build against GNU TLS. - Retune ncbi-data/ncbi-rrna-data split. * debian/libncbi6(-dev).install, make/makeshlib.unx: Account for new libconnssl library. * debian/rules: - Drop override_dh_strip-arch target now that -dbg packages are gone. - Fix typo in name of override_dh_makeshlibs-arch target from #806084. * debian/{rules,.gitignore}: Stop generating legacy menu files for non-interactive tools (already retired in favor of XDG desktop files for true graphical applications). * debian/rules, make/make{demo,net}.unx: Substitute -Wl,--as-needed for manual linkage cleanups. * demo/tbl2asn.c: Complain about date only if failing for other reasons. (Closes: #821075.) * doc/man/blastcl3.1: Fix a stray reference to retired programs. 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