-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 26 Mar 2018 11:38:05 +0200 Source: seqan2 Binary: seqan-apps libseqan2-dev Architecture: source amd64 all Version: 2.4.0+dfsg-8~bpo8+1 Distribution: jessie-backports Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Description: libseqan2-dev - C++ library for the analysis of biological sequences (development seqan-apps - C++ library for the analysis of biological sequences Closes: 862484 877349 878933 882169 884548 890385 Changes: seqan2 (2.4.0+dfsg-8~bpo8+1) jessie-backports; urgency=medium . * Rebuild for jessie-backports. . seqan2 (2.4.0+dfsg-8) unstable; urgency=medium . * Fix AutoPkgTests. Miscellaneous cleanups of debian/rules. * Use seperate build directory for the -dev package so we can run cmake with -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY . seqan2 (2.4.0+dfsg-7) unstable; urgency=medium . * Split override_dh_install into -arch and -indep . seqan2 (2.4.0+dfsg-6) unstable; urgency=medium . * Retry building on mips*; patch adapted from Adrian Bunk <bunk@debian.org> Closes: #890385. Thanks! * Document CWL generation via README.source. Mark all CWL files as executable * Enable AutoPackageTests for seqan-apps * Applied 2 patches from upstream: add mandatory ctdVersion element, fix errors in manpage output * Suggest cwltool | cwl-runner. . seqan2 (2.4.0+dfsg-5) unstable; urgency=medium . * Ship CWL descriptions for a subset of seqan-apps * Give up on mips & mipsel due to lack of memory . seqan2 (2.4.0+dfsg-4) unstable; urgency=medium . * Update seqan-config.cmake installation location as per upstream: https://github.com/seqan/seqan/issues/2276 * Drop mips* to -O2 from -O3 . seqan2 (2.4.0+dfsg-3) unstable; urgency=medium . * Remove parallel building form mips{,el} * AMD64 is freezing up on the builders, drop max parallel builds to 2 . seqan2 (2.4.0+dfsg-2) unstable; urgency=medium . * Drop mips{,el} down to 2 max parallel builds. * Latest release fixes the failing tests issue. (Closes: #884548) . seqan2 (2.4.0+dfsg-1) unstable; urgency=medium . * 2.4.0 is released! * Install seqan-2.pc to /usr/share/pkgconfig as it is arch independent . seqan2 (2.4.0~rc2+dfsg-1) experimental; urgency=medium . * Testing upstream's 3rd formal release candidate for 2.4.0 * debian/rules: use --max-parallel to more cleanly limit parallel building . seqan2 (2.4.0~rc1+dfsg-2) experimental; urgency=medium . * debian/rules: Drop amd64, mips, mipsel to -j3 to save memory . seqan2 (2.4.0~rc1+dfsg-1) experimental; urgency=medium . * Testing upstream's 2nd formal release candidate for 2.4.0 . seqan2 (2.4.0~rc0+dfsg-1) experimental; urgency=medium . * Testing upstream's formal release candidate . seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-2) experimental; urgency=medium . * enable asyncio on all archs as a test * disable parallel building on powerpcspe . seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-1) experimental; urgency=medium . * Hopefully final update from upstream :-) . seqan2 (2.3.2.000platform-issues9-028fd79+dfsg-1) experimental; urgency=medium . * Another update from upstream * debian/rules: build flags simplification: - use DEB_*_MAINT_APPEND - pass -DNDEBUG -O3 as per upstream - drop -DSEQAN_BUILD_SYSTEM=DEVELOP as that is the default . seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-2) experimental; urgency=medium . * Force rebuild . seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-1) experimental; urgency=medium . * Another update from upstream . seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-2) experimental; urgency=medium . [ Andreas Tille ] * Work around missing dir in indep-only builds Closes: #882169 . [ Michael R. Crusoe ] * Cleanup from not pushing my changes . seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-1) experimental; urgency=medium . * Another update from upstream . seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-3) experimental; urgency=medium . * Typo fix . seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-2) experimental; urgency=medium . * Now try -O3 everywhere * Remove the sparc64 test code * Delete symlinks for apps that are skipped for a particular architecture . seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-1) experimental; urgency=medium . * Skip yara on kfreebsd-i386 * Try out -O2 on archs that had been previously -O1 * Fix typo in bam2roi help text * From upstream: another round of changes for the problems that affect all big endian. . seqan2 (2.3.2.000platform-issues5-86390dc+dfsg-1) experimental; urgency=medium . * Another update from upstream including a tweak to sparc64 . seqan2 (2.3.2.000platform-issues4-fba8744+dfsg-1) experimental; urgency=medium . * Another refresh from upstream's branch * Skip yara on armel, as well. * d/control: declare seqan2 can be built without root, R³:no. . seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-2) experimental; urgency=medium . * Skip yara on armhf & sh4. * Disable parallel building on armel . seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-1) experimental; urgency=medium . * require tests to pass everywhere * skip the razers{3,} and yara apps on mips{el,} * restore parallel build blocking only for armhf, sh4, and kfreebsd* * Another refresh from upstream, this time focusing on bam files . seqan2 (2.3.2.000platform-issues2-206d1f7+dfsg-1) experimental; urgency=medium . * Typo for CXXFLAGS: -O1 instead of -01 * Another refresh from upstream in response to errors discovered via the Debian build machines. . seqan2 (2.3.2.000platform-issues1-66a8baf+dfsg-1) experimental; urgency=medium . * Refresh from upstream with additional fixes . seqan2 (2.3.2.000platform-issues0-8ae7bc0+dfsg1-1) experimental; urgency=medium . * Patch for mips64el from bunk@debian.org (Closes: #878933) * Temporarily enable all archs again * Upstream source is pre-2.4.0, remove patches that they have merged: short-description, spelling * Cleaned up per-arch settings in debian/rules . seqan2 (2.3.2+dfsg2-4) unstable; urgency=medium . * Work around missing dir in indep-only builds Closes: #882169 * d/rules: drop --parallel which is redundant for debhelper 10 * Do not generate manpages in arch indep builds (as done in experimental branch) . seqan2 (2.3.2+dfsg2-3) unstable; urgency=medium . * Patch for mips64el from bunk@debian.org (Closes: #878933) * Cleaned up per-arch settings in debian/rules * Disable parallel building on sh4 . seqan2 (2.3.2+dfsg2-2) unstable; urgency=medium . * As per upstream, disable async-io for many platforms * Remove jinja2, python-nose, and dh-linktree dependencies as we are not yet building the docs * Switch to GitHub releases for HTTPS protection . seqan2 (2.3.2+dfsg2-1) unstable; urgency=medium . * Still not enough memory for seqan-apps on amrhf, disabling * seqan-apps: run tests post build, everywhere . seqan2 (2.3.2+dfsg-2) unstable; urgency=medium . * Re-enable armhf, h/t Ubuntu * Disabling armel again due to lack of memory on buildd. (Closes: #877349) . seqan2 (2.3.2+dfsg-1) unstable; urgency=medium . * New upstream release. * Re-enable armel, now that upstream bug fixed in https://gcc.gnu.org/bugzilla/show_bug.cgi?id=64735 * removed debian/patches/skip-SEQAN_PKGCFG_CFLAGS, incorporated upstream . seqan2 (2.3.1+dfsg-5) unstable; urgency=medium . * Team upload. * Make build reproducible. Thanks to Chris Lamb for the patch. 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