bcbio - Debian Package Tracker

general

source: bcbio (contrib)
version: 1.2.5-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Steffen Moeller [DMD]
arch: all
std-ver: 4.5.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 1.1.2-3
stable: 1.2.5-1
unstable: 1.2.5-1

versioned links

1.1.2-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.2.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bcbio
python3-bcbio

action needed

A new upstream version is available: 1.2.9 high

A new upstream version 1.2.9 is available, you should consider packaging it.

Created: 2022-02-24 Last update: 2022-05-18 06:01

lintian reports 1 error and 19 warnings high

Lintian reports 1 error and 19 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2020-07-29 Last update: 2022-01-01 04:31

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2022-05-09 Last update: 2022-05-18 08:31

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 1.2.8-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit ffdc327858cbedf8bd9d3d7f1a777cdebac537e7
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 23:55:11 2021 +0200

    Always use our Rscript.

commit 793c330de6805efac17fc4527d388778f5f52081
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 23:17:42 2021 +0200

    Update of dependencies

commit 500c1dd9c71ac9ac534b689a328b6e4d959ad08f
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 22:31:43 2021 +0200

    Removed obsolete patch

commit cd8feac301800694e286f39f4104597b70d1d857
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 20:34:48 2021 +0200

    routine-update: Restructuring of d/control

commit c3259f06c9812d149e6af0a4940b82b7a3b1faad
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 20:30:42 2021 +0200

    routine-update: Standards-Version: 4.5.1

commit 5e993c9aa9ece3aec40f93e54c89fad69cbaa7db
Merge: c2d9ba1 6d1de78
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 20:30:42 2021 +0200

    Update upstream source from tag 'upstream/1.2.8'
    
    Update to upstream version '1.2.8'
    with Debian dir 6a59ce8b07eb9a17d3fb1fc1a8dfe3cf437b3159

commit c2d9ba1919b43b65c9928925e00568e5db0e0ef1
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 20:29:57 2021 +0200

    routine-update: New upstream version

commit 6d1de7876abe66b9c405a04d2d83aa2ac9197621
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri May 7 20:29:57 2021 +0200

    New upstream version 1.2.8

commit 68261fcdb35b8f5d078023944114bc5b465cb884
Author: Steffen Moeller <moeller@debian.org>
Date:   Wed Feb 10 18:29:23 2021 +0100

    Upstream accepted patch, added dep on libhts-dev
    
    The .so is attempted to be loaded.

commit a4e8977a79fe8d41afa15720d7249191b156761c
Merge: bbe5fb1 5c8848a
Author: Steffen Moeller <moeller@debian.org>
Date:   Wed Feb 10 16:25:03 2021 +0100

    Update upstream source from tag 'upstream/1.2.6'
    
    Update to upstream version '1.2.6'
    with Debian dir 302e32dd03f2c29d4ea15076af5ae9170dc10e54

commit 5c8848abe4fd3d8b9864a6b79451c82111cfbb92
Author: Steffen Moeller <moeller@debian.org>
Date:   Wed Feb 10 16:24:07 2021 +0100

    New upstream version 1.2.6

commit bbe5fb17531f381785724476861b81cf9d2eba99
Author: Steffen Moeller <moeller@debian.org>
Date:   Tue Jan 26 14:22:37 2021 +0100

    New upstream version.

commit 17c33c5a0c1b0398a9c64af61c803201f741c36b
Merge: a48982a 1c20daf
Author: Steffen Moeller <moeller@debian.org>
Date:   Tue Jan 26 13:54:36 2021 +0100

    Update upstream source from tag 'upstream/1.2.5'
    
    Update to upstream version '1.2.5'
    with Debian dir 170647d8542f5cc09d1688feb0947f06d4cb0f01

commit 1c20dafa2114b4a1649475df5bbb3bd24a22a18c
Author: Steffen Moeller <moeller@debian.org>
Date:   Tue Jan 26 13:53:56 2021 +0100

    New upstream version 1.2.5

commit a48982aa7bca71129decc931487c09ef30496119
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Dec 13 15:24:43 2020 +0100

    TL;DR for d/TODO

commit 097a6fd6f3b31b588aa034a942d480a124352aaa
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Dec 7 18:40:30 2020 +0100

    Added build dependencies

commit a2aa99d1c867b16da50e1c57d3d65dbf7cbb2ed0
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Dec 7 18:40:02 2020 +0100

    Extended paths available for testing

commit d94cceaa36d209359b470b29278d2fac746f2901
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Dec 2 22:24:08 2020 +0000

    Update TODO

commit c27884029a9a7e15d9292117572dd116c1a143ca
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Nov 23 16:14:38 2020 +0100

    Refinements after introducing gsort

commit 50ace2d97dffa89c7175c39a1f0edf608f971443
Author: Steffen Moeller <moeller@debian.org>
Date:   Sat Nov 14 22:30:48 2020 +0100

    cnvkit executable now found without further ado

commit e23c8f362fb33cc9a54dd755e132f2c961ca6d49
Author: Steffen Moeller <moeller@debian.org>
Date:   Fri Nov 13 23:16:13 2020 +0100

    Series of updates.

Created: 2020-11-14 Last update: 2022-05-18 00:08

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.6.1 instead of 4.5.0).

Created: 2020-11-17 Last update: 2022-05-11 23:24

testing migrations

excuses:
- Migration status: Blocked. Can't migrate due to a non-migratable dependency. Check status below.
- Blocked by: pythonpy
- Migrates after: salmon
- Migration status for bcbio (- to 1.2.5-1): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
- Issues preventing migration:
- ∙ ∙ Build-Depends(-Arch): bcbio pythonpy (not considered)
- ∙ ∙ Invalidated by build-dependency
- ∙ ∙ Build-Depends(-Arch): bcbio salmon
- Additional info:
- ∙ ∙ Cannot be tested by piuparts (not a blocker) - (no link yet)
- ∙ ∙ autopkgtest for bcbio/1.2.5-1: amd64: No test results, arm64: No test results, armhf: No test results, i386: No test results, ppc64el: No test results, s390x: Not a regression
- ∙ ∙ 477 days old (needed 5 days)
- Not considered

news

[rss feed]

[2022-05-10] bcbio REMOVED from testing (Debian testing watch)
[2021-09-30] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-09-29] bcbio REMOVED from testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-01-26] Accepted bcbio 1.2.5-1 (source) into unstable (Steffen Moeller)
[2020-11-06] Accepted bcbio 1.2.4-2 (source) into unstable (Andreas Tille)
[2020-09-25] Accepted bcbio 1.2.4-1 (source) into unstable (Steffen Moeller)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-06-14] bcbio 1.2.0-2 MIGRATED to testing (Debian testing watch)
[2020-03-11] Accepted bcbio 1.2.0-2 (source) into unstable (Andreas Tille)
[2020-02-25] Accepted bcbio 1.2.0-1 (source all) into unstable (Steffen Moeller)
[2020-02-14] Accepted bcbio 1.1.9-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-12-11] Accepted bcbio 1.1.9-1 (source) into unstable (Steffen Moeller)
[2019-11-26] Accepted bcbio 1.1.8-1 (source) into unstable (Steffen Moeller)
[2019-11-08] Accepted bcbio 1.1.7-1 (source all) into unstable, unstable (Steffen Moeller)
[2019-08-14] Accepted bcbio 1.1.5-1 (source all) into unstable (Steffen Moeller)
[2019-04-14] Accepted bcbio 1.1.4-1 (source all) into unstable (Steffen Moeller)
[2019-03-21] Accepted bcbio 1.1.3-1 (source all) into unstable (Michael R. Crusoe) (signed by: Steffen Moeller)
[2019-01-29] bcbio 1.1.2-3 MIGRATED to testing (Debian testing watch)
[2019-01-23] Accepted bcbio 1.1.2-1 (source all) into unstable, unstable (Steffen Moeller)
[2019-01-23] Accepted bcbio 1.1.2-3 (source all) into unstable, unstable (Steffen Moeller)
[2019-01-23] Accepted bcbio 1.1.2-2 (source all) into unstable, unstable (Steffen Moeller)

bugs [bug history graph]

all: 1
RC: 0
I&N: 1
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian (1, 19)
buildd: logs, clang
popcon
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