Debian Package Tracker

general

source: bcbio (main)
version: 1.1.4-1
maintainer: Debian Med Packaging Team (archive) [DMD] [LowNMU]
uploaders: Steffen Moeller [DMD]
arch: all
std-ver: 4.3.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

testing: 1.1.2-3
unstable: 1.1.4-1

versioned links

1.1.2-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.1.4-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bcbio
bcbio-doc
python3-bcbio

action needed

A new upstream version is available: 1.1.5 high

A new upstream version 1.1.5 is available, you should consider packaging it.

Created: 2019-04-05 Last update: 2019-05-22 17:19

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2019-04-20 Last update: 2019-05-22 20:00

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 1.1.4-2, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit c96b034925066b9d42b618be9235267830e8f58b
Author: Andreas Tille <tille@debian.org>
Date:   Thu May 16 09:49:46 2019 +0200

    Recommends: umis (accepted to unstable)

commit 43c6515dbb528e1487da0b13658db62df9c0b451
Author: Andreas Tille <tille@debian.org>
Date:   Fri May 10 17:42:43 2019 +0200

    r-other-wasabi in new queue

commit 6d70b08dbdc68156880bf99086e0397f83039213
Author: Andreas Tille <tille@debian.org>
Date:   Sat Apr 27 07:56:17 2019 +0200

    Beginn of packaging is in Salsa

commit 92d1434e0ea8784ddc7c52475ef06236c2c9dfc8
Author: Andreas Tille <tille@debian.org>
Date:   Sat Apr 27 07:54:53 2019 +0200

    r-other-wasabi and oncufuse injected into Salsa (both not finished)

commit d8902ed2a6b6f74f65053aed76549b4a51587b75
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Apr 18 17:46:53 2019 +0200

    Updates to bcbio's TODO list

commit ea18afc57fbb62ae4265098af1bad5a101e97f6d
Author: Andreas Tille <tille@debian.org>
Date:   Thu Apr 18 12:47:23 2019 +0200

    Initial packaging skeleton at https://salsa.debian.org/med-team/gffread

commit f01b74ddb3edc28ff831904d42f135edfe1f03ae
Author: Andreas Tille <tille@debian.org>
Date:   Thu Apr 18 11:10:39 2019 +0200

    Qalimap packaging is in Git but some code depencency lost

commit 70ff04377ad64e9a7e134ec6b8eb90ca0a14d8f3
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Apr 18 01:03:21 2019 +0200

    build tests bring more dependencies

commit 224914aca1acac67c345d1ad2492850aa5686e86
Merge: bab609c 3be210d
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Apr 17 20:56:46 2019 +0200

    Merge branch 'master' of salsa.debian.org:med-team/bcbio

commit bab609c608db094e5c2ad0cf43f2ff46e84271a8
Author: Steffen Möller <moeller@debian.org>
Date:   Wed Apr 17 20:56:35 2019 +0200

    Added Lumpy and Manta to TODO list for bcbio

commit 3be210d092009a7b0a6cf08af67b6b46b4dc0c76
Author: Andreas Tille <tille@debian.org>
Date:   Wed Apr 17 11:01:53 2019 +0200

    Rudimentary packaging for vcfanno pushed to Salsa

commit 94e816873954e01492d7ed42a4bb6554f9f9a36d
Merge: 189397a da67169
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Apr 14 16:42:11 2019 +0200

    Merge branch 'master' of salsa.debian.org:med-team/bcbio

commit 189397abcc6f67c2df35292c483d3b263e53c77a
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Apr 14 16:41:16 2019 +0200

    Uploaded .14 new upstream version
    
    Work on tests needs to be completed.

commit da6716984c75348e92aab043a53eca28ffcb4112
Author: Andreas Tille <tille@debian.org>
Date:   Sun Apr 14 06:26:42 2019 +0200

    https://github.com/indraniel/OptiType is just a fork of an old version of optitype

commit be590c259698f3968011b198d1c4ac119a97a9bb
Author: Andreas Tille <tille@debian.org>
Date:   Sat Apr 13 19:52:47 2019 +0200

    Update TODO

commit 5c3c0fc06a6babaddcf333af6a047d0f176c18e2
Author: Andreas Tille <tille@debian.org>
Date:   Sat Apr 13 10:49:10 2019 +0200

    Update TODO

commit 18ee7b3cfcbaf1b60f23f66210fa352b19890949
Author: Andreas Tille <tille@debian.org>
Date:   Sat Apr 13 07:47:59 2019 +0200

    Update TODO

commit bc10e237464aa8c6638c361fbdd08b5102a27425
Author: Andreas Tille <tille@debian.org>
Date:   Fri Apr 12 13:44:46 2019 +0200

    Rudimentary packaging for atropos

commit 73d036672fd93440ecdb387fa60e4d7c6dff25bc
Author: Andreas Tille <tille@debian.org>
Date:   Fri Apr 12 10:58:56 2019 +0200

    Rudimentary packaging of biobambam2

commit 55e88e34a586a6f6743cbf6b7eb2be5271c56069
Author: Andreas Tille <tille@debian.org>
Date:   Thu Apr 11 21:43:12 2019 +0200

    Update TODO

commit d7b53059f326dc800095abc65b7ad8728058ae75
Merge: 31c8df2 7e68a1c
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Apr 11 12:56:14 2019 +0200

    Update upstream source from tag 'upstream/1.1.4'
    
    Update to upstream version '1.1.4'
    with Debian dir 3a7e136e3d6bf67998442cc491be453fc411f09f

commit 7e68a1c2b85360ecaab4e1abd57faf298fbcb64b
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Apr 11 12:55:17 2019 +0200

    New upstream version 1.1.4

commit 31c8df20f037d292d8699d635affa0fae9be86de
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Apr 11 12:54:37 2019 +0200

    Updated control, TODO

commit 3a5bfc9a55a5a782d22f7ee5d498e616a6fbb55b
Author: Andreas Tille <tille@debian.org>
Date:   Thu Mar 21 16:31:35 2019 +0100

    Some metadata for kallisto

commit 47e02d0edfb02ca0e92db779d7743ac0905b26fd
Author: Andreas Tille <tille@debian.org>
Date:   Thu Mar 21 15:51:26 2019 +0100

    Add some URLs

commit e52b151133c3af226fb80401eb54497bfa1c4e87
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Mar 21 14:01:44 2019 +0100

    Update for newly packaged StringTie

commit 7b98f981e77e80d109e7b14e4cacc2e544a480a1
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 01:16:54 2019 -0800

    Add recommendations discovered through testing
    
    and make a list of software that needs packaging

commit f188722ae030378ed2cdbff7d63f1484da185827
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 01:02:41 2019 -0800

    python3-bcbio: section is "python"

commit 63353604fecedcfef1690e3af5d6ee589a6a44ea
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 01:00:59 2019 -0800

    add pytest to enable running the tests

commit 0b8fbcfe450a32be6bf300faa6a07e26e4ccab0d
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:56:04 2019 -0800

    fixes a few spelling errors

commit b2ff8b839bb06eaf2f08ae27388c2c31fe25a3bd
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:48:02 2019 -0800

    add ${sphinxdoc:Built-Using} to -doc

commit 5d78e887138135274bbb4989af2f60c704934b38
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:45:24 2019 -0800

    debian/patches/python3.patch: removed, applied upstream

commit 8d2a4655c9667033197722fbe20102582fee6398
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:42:51 2019 -0800

    new upstream release

commit d44333413b59d7e3e2517665c89a168944750d8d
Merge: 5e2407d d9e2b21
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:41:40 2019 -0800

    Update upstream source from tag 'upstream/1.1.3'
    
    Update to upstream version '1.1.3'
    with Debian dir 66b4b7739104633ad67c5c4511f4d60bbbd50333

commit d9e2b213d053cd3071fde18f521f7130cd609da0
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:40:50 2019 -0800

    New upstream version 1.1.3

commit 5e2407d63b681f9fa7949220147f279132213c62
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Feb 10 00:36:48 2019 -0800

    bcbio-doc: mark as "Multi-Arch: foreign"

Created: 2019-01-23 Last update: 2019-05-22 07:11

lintian reports 17 warnings normal

Lintian reports 17 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2019-04-04 Last update: 2019-04-15 12:11

testing migrations

excuses:
- 38 days old (5 needed)
- Piuparts tested OK - https://piuparts.debian.org/sid/source/b/bcbio.html
- Checking build-dependency on amd64
- Not touching package due to block request by freeze (please contact debian-release if update is needed)
- Not considered

news

[rss feed]

[2019-04-14] Accepted bcbio 1.1.4-1 (source all) into unstable (Steffen Moeller)
[2019-03-21] Accepted bcbio 1.1.3-1 (source all) into unstable (Michael R. Crusoe) (signed by: Steffen Moeller)
[2019-01-29] bcbio 1.1.2-3 MIGRATED to testing (Debian testing watch)
[2019-01-23] Accepted bcbio 1.1.2-1 (source all) into unstable, unstable (Steffen Moeller)
[2019-01-23] Accepted bcbio 1.1.2-3 (source all) into unstable, unstable (Steffen Moeller)
[2019-01-23] Accepted bcbio 1.1.2-2 (source all) into unstable, unstable (Steffen Moeller)

bugs [bug history graph]

all: 1
RC: 0
I&N: 1
M&W: 0
F&P: 0
patch: 0

links

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version: 1.1.4-1