bcbio - Debian Package Tracker

general

source: bcbio (contrib)
version: 1.2.9-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Steffen Moeller [DMD]
arch: all
std-ver: 4.6.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.2.5-1
oldstable: 1.2.9-2
unstable: 1.2.9-4

versioned links

1.2.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.2.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.2.9-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bcbio
python3-bcbio

action needed

Debci reports failed tests high

unstable: neutral (log)
The tests ran in 0:01:38
Last run: 2025-10-13T20:43:03.000Z
Previous status: unknown

testing: neutral (log)
The tests ran in 0:01:33
Last run: 2024-02-28T20:47:53.000Z
Previous status: unknown

stable: fail (log)
The tests ran in 0:00:20
Last run: 2025-08-10T23:36:26.000Z
Previous status: unknown

Created: 2025-08-11 Last update: 2025-10-31 20:02

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2025-07-20 Last update: 2025-10-31 20:00

1 new commit since last upload, is it time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit 6b77ed176b34f7b111f414b8be6e83c6d84cb201
Author: Alexandre Detiste <alexandre.detiste@gmail.com>
Date:   Tue Oct 28 15:10:45 2025 +0100

    replace usage of "py.test-3" compat symlink with canonical "pytest"

Created: 2025-10-28 Last update: 2025-10-28 15:00

lintian reports 6 warnings normal

Lintian reports 6 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2025-07-21 Last update: 2025-07-21 22:02

debian/patches: 8 patches to forward upstream low

Among the 8 debian patches available in version 1.2.9-4 of the package, we noticed the following issues:

8 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-06-30 18:05

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).

Created: 2022-12-17 Last update: 2025-06-30 17:28

testing migrations

excuses:
- Migrates after: salmon, umis
- Migration status for bcbio (- to 1.2.9-4): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating bcbio would introduce bugs in testing: #928076
- ∙ ∙ Build-Depends(-Arch): bcbio salmon (not considered)
- ∙ ∙ Build-Depends(-Arch): bcbio umis (not considered)
- Additional info (not blocking):
- ∙ ∙ Piuparts can't test bcbio (not a blocker) - (no link yet)
- ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
- ∙ ∙ Autopkgtest for bcbio/1.2.9-4: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, i386: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: No tests, superficial or marked flaky ♻
- ∙ ∙ 124 days old (needed 5 days)
- Not considered

news

[rss feed]

[2025-06-30] Accepted bcbio 1.2.9-4 (source) into unstable (Alexandre Detiste)
[2025-02-17] Accepted bcbio 1.2.9-3 (source) into unstable (Andreas Tille) (signed by: Alexandre Detiste)
[2024-03-08] bcbio REMOVED from testing (Debian testing watch)
[2024-01-19] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-11-30] bcbio REMOVED from testing (Debian testing watch)
[2023-10-14] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-07-14] bcbio REMOVED from testing (Debian testing watch)
[2023-02-13] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-01-23] bcbio REMOVED from testing (Debian testing watch)
[2022-11-29] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2022-10-12] Accepted bcbio 1.2.9-2 (source all) into unstable (Andreas Tille)
[2022-08-22] Accepted bcbio 1.2.9-1 (source all) into unstable (Lance Lin) (signed by: Andreas Tille)
[2022-05-10] bcbio REMOVED from testing (Debian testing watch)
[2021-09-30] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-09-29] bcbio REMOVED from testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-01-26] Accepted bcbio 1.2.5-1 (source) into unstable (Steffen Moeller)
[2020-11-06] Accepted bcbio 1.2.4-2 (source) into unstable (Andreas Tille)
[2020-09-25] Accepted bcbio 1.2.4-1 (source) into unstable (Steffen Moeller)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-06-14] bcbio 1.2.0-2 MIGRATED to testing (Debian testing watch)
[2020-03-11] Accepted bcbio 1.2.0-2 (source) into unstable (Andreas Tille)
[2020-02-25] Accepted bcbio 1.2.0-1 (source all) into unstable (Steffen Moeller)
[2020-02-14] Accepted bcbio 1.1.9-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-12-11] Accepted bcbio 1.1.9-1 (source) into unstable (Steffen Moeller)
[2019-11-26] Accepted bcbio 1.1.8-1 (source) into unstable (Steffen Moeller)
[2019-11-08] Accepted bcbio 1.1.7-1 (source all) into unstable, unstable (Steffen Moeller)
[2019-08-14] Accepted bcbio 1.1.5-1 (source all) into unstable (Steffen Moeller)

bugs [bug history graph]

all: 1
RC: 1
I&N: 0
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian (0, 6)
buildd: logs
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ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.2.9-4