bcbio - Debian Package Tracker

general

source: bcbio (contrib)
version: 1.2.9-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Steffen Moeller [DMD]
arch: all
std-ver: 4.6.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 1.2.5-1
stable: 1.2.9-2
unstable: 1.2.9-4

versioned links

1.2.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.2.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.2.9-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bcbio
python3-bcbio

action needed

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 20-day delay is over. Check why.

Created: 2025-07-20 Last update: 2025-07-21 19:02

debian/patches: 8 patches to forward upstream low

Among the 8 debian patches available in version 1.2.9-4 of the package, we noticed the following issues:

8 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-06-30 18:05

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).

Created: 2022-12-17 Last update: 2025-06-30 17:28

testing migrations

excuses:
- Migrates after: mosdepth, r-bioc-degreport, umis
- Migration status for bcbio (- to 1.2.9-4): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating bcbio would introduce bugs in testing: #928076
- ∙ ∙ blocked by freeze: is not in testing
- ∙ ∙ Build-Depends(-Arch): bcbio mosdepth (not considered)
- ∙ ∙ Build-Depends(-Arch): bcbio r-bioc-degreport (not considered)
- ∙ ∙ Build-Depends(-Arch): bcbio umis (not considered)
- Additional info:
- ∙ ∙ Cannot be tested by piuparts (not a blocker) - (no link yet)
- ∙ ∙ uninstallable on arch s390x (which is allowed), not running autopkgtest there
- ∙ ∙ autopkgtest for bcbio/1.2.9-4: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, armel: No tests, superficial or marked flaky ♻, armhf: No tests, superficial or marked flaky ♻, i386: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: No tests, superficial or marked flaky ♻
- ∙ ∙ 21 days old (needed 20 days)
- Not considered

news

[rss feed]

[2025-06-30] Accepted bcbio 1.2.9-4 (source) into unstable (Alexandre Detiste)
[2025-02-17] Accepted bcbio 1.2.9-3 (source) into unstable (Andreas Tille) (signed by: Alexandre Detiste)
[2024-03-08] bcbio REMOVED from testing (Debian testing watch)
[2024-01-19] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-11-30] bcbio REMOVED from testing (Debian testing watch)
[2023-10-14] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-07-14] bcbio REMOVED from testing (Debian testing watch)
[2023-02-13] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2023-01-23] bcbio REMOVED from testing (Debian testing watch)
[2022-11-29] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
[2022-10-12] Accepted bcbio 1.2.9-2 (source all) into unstable (Andreas Tille)
[2022-08-22] Accepted bcbio 1.2.9-1 (source all) into unstable (Lance Lin) (signed by: Andreas Tille)
[2022-05-10] bcbio REMOVED from testing (Debian testing watch)
[2021-09-30] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-09-29] bcbio REMOVED from testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
[2021-01-26] Accepted bcbio 1.2.5-1 (source) into unstable (Steffen Moeller)
[2020-11-06] Accepted bcbio 1.2.4-2 (source) into unstable (Andreas Tille)
[2020-09-25] Accepted bcbio 1.2.4-1 (source) into unstable (Steffen Moeller)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-08-29] bcbio REMOVED from testing (Debian testing watch)
[2020-06-14] bcbio 1.2.0-2 MIGRATED to testing (Debian testing watch)
[2020-03-11] Accepted bcbio 1.2.0-2 (source) into unstable (Andreas Tille)
[2020-02-25] Accepted bcbio 1.2.0-1 (source all) into unstable (Steffen Moeller)
[2020-02-14] Accepted bcbio 1.1.9-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-12-11] Accepted bcbio 1.1.9-1 (source) into unstable (Steffen Moeller)
[2019-11-26] Accepted bcbio 1.1.8-1 (source) into unstable (Steffen Moeller)
[2019-11-08] Accepted bcbio 1.1.7-1 (source all) into unstable, unstable (Steffen Moeller)
[2019-08-14] Accepted bcbio 1.1.5-1 (source all) into unstable (Steffen Moeller)

bugs [bug history graph]

all: 1
RC: 1
I&N: 0
M&W: 0
F&P: 0
patch: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.2.9-4
1 bug