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bcftools

genomic variant calling and manipulation of VCF/BCF files

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general

source: bcftools (main)
version: 1.9-1
maintainer: Debian Med Packaging Team (archive) [DMD] [LowNMU]
uploaders: Afif Elghraoui [DMD]
arch: any
std-ver: 4.2.1
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

old-bpo: 1.3.1-1~bpo8+2
stable: 1.3.1-1
stable-bpo: 1.8-1~bpo9+1
testing: 1.9-1
unstable: 1.9-1

versioned links

1.3.1-1~bpo8+2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.3.1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.8-1~bpo9+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.9-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bcftools

action needed

lintian reports 8 warnings high

Lintian reports 8 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2018-04-08 Last update: 2018-09-05 05:00

Fails to build during reproducibility testing normal

A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!

Created: 2018-09-08 Last update: 2018-11-19 10:11

8 new commits since last upload, time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit 3e9bdd4ed7547d01bd0e09f20bdffa501023eab0
Author: Andreas Tille <tille@debian.org>
Date:   Tue Sep 4 16:44:42 2018 +0200

    Upload to unstable

commit 994f0c76ade6eafbef0923f4bf63f1bf5b0bd8e3
Author: Andreas Tille <tille@debian.org>
Date:   Tue Sep 4 16:37:25 2018 +0200

    Fix Perl interpreter PATH

commit 881e4c8f6f34a5dda429e243eda50ff1df5a37ab
Author: Andreas Tille <tille@debian.org>
Date:   Tue Sep 4 16:36:58 2018 +0200

    Standards-Version: 4.2.1

commit c1c69bb5a068b0c94b4396e3f8aac8b6c2fb8480
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 2 04:49:14 2018 +0200

    Adapt patches

commit fa16c9ff6f035a7031419135eaa5f934b53b3c3c
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 2 04:47:59 2018 +0200

    Standards-Version: 4.1.5

commit 0dcd59ecb872e179d065124fc1aca91117501b5f
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 2 04:41:09 2018 +0200

    New upstream version

commit a6654e1bc626e4a62b78590321c86d9f281ccb44
Merge: 0a2bc11 99b9763
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 2 04:41:09 2018 +0200

    Update upstream source from tag 'upstream/1.9'
    
    Update to upstream version '1.9'
    with Debian dir 3c24f90ab91127f24977642af6d85e68be435626

commit 99b9763265e6b80dcd2965fc3a752c17b6514b45
Author: Andreas Tille <tille@debian.org>
Date:   Thu Aug 2 04:40:55 2018 +0200

    New upstream version 1.9

Created: 2018-09-04 Last update: 2018-11-19 06:12

news

[2018-09-07] bcftools 1.9-1 MIGRATED to testing (Debian testing watch)
[2018-09-04] Accepted bcftools 1.9-1 (source) into unstable (Andreas Tille)
[2018-05-22] Accepted bcftools 1.8-1~bpo9+1 (source amd64) into stretch-backports, stretch-backports (Andreas Tille)
[2018-04-25] bcftools 1.8-1 MIGRATED to testing (Debian testing watch)
[2018-04-20] Accepted bcftools 1.8-1 (source) into unstable (Andreas Tille)
[2018-02-26] bcftools 1.7-2 MIGRATED to testing (Debian testing watch)
[2018-02-20] Accepted bcftools 1.7-2 (source) into unstable (Andreas Tille)
[2018-02-17] Accepted bcftools 1.7-1 (source) into unstable (Andreas Tille)
[2017-12-20] bcftools 1.6-3 MIGRATED to testing (Debian testing watch)
[2017-12-14] Accepted bcftools 1.6-3 (source) into unstable (Andreas Tille)
[2017-12-13] Accepted bcftools 1.6-2 (source) into experimental (Andreas Tille)
[2017-12-11] Accepted bcftools 1.6-1 (source) into experimental (Andreas Tille)
[2017-11-26] bcftools 1.5-4 MIGRATED to testing (Debian testing watch)
[2017-11-10] Accepted bcftools 1.5-4 (source) into unstable (Graham Inggs) (signed by: Mattia Rizzolo)
[2017-11-08] Accepted bcftools 1.5-3 (source amd64) into unstable (Andreas Tille)
[2017-10-12] Accepted bcftools 1.5-2 (source) into unstable (Afif Elghraoui)
[2017-10-01] Accepted bcftools 1.5-1 (source) into unstable (Afif Elghraoui)
[2017-08-08] Accepted bcftools 1.5-1~exp1 (source) into experimental (Afif Elghraoui)
[2017-08-04] bcftools 1.4.1-3 MIGRATED to testing (Debian testing watch)
[2017-07-29] Accepted bcftools 1.4.1-3 (source amd64) into unstable (Sascha Steinbiss)
[2017-07-23] Accepted bcftools 1.4.1-2 (source) into unstable (Graham Inggs)
[2017-06-18] Accepted bcftools 1.4.1-1 (source amd64) into unstable (Andreas Tille)
[2017-03-23] Accepted bcftools 1.3.1-1~bpo8+2 (source amd64) into jessie-backports->backports-policy, jessie-backports (Andreas Tille)
[2016-05-12] Accepted bcftools 1.3.1-1~bpo8+1 (source amd64) into jessie-backports (Afif Elghraoui)
[2016-05-01] bcftools 1.3.1-1 MIGRATED to testing (Debian testing watch)
[2016-04-26] Accepted bcftools 1.3.1-1 (source) into unstable (Afif Elghraoui)
[2016-04-06] bcftools 1.3-3 MIGRATED to testing (Debian testing watch)
[2016-03-31] Accepted bcftools 1.3-3 (source) into unstable (Afif Elghraoui)
[2016-02-27] bcftools 1.3-2 MIGRATED to testing (Debian testing watch)
[2016-02-22] Accepted bcftools 1.3-2 (source) into unstable (Afif Elghraoui)

1
2

bugs [bug history graph]

all: 2 4
RC: 0
I&N: 2 4
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian (0, 8)
buildd: logs, clang, reproducibility
popcon
debci
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screenshots

ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.9-1
1 bug

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