Register | Log in

berkeley-express

Streaming quantification for high-throughput sequencing

Choose email to subscribe with

general

source: berkeley-express (main)
version: 1.5.3+dfsg-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Michael R. Crusoe [DMD]
arch: all any
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.5.3+dfsg-1
oldstable: 1.5.3+dfsg-3
stable: 1.5.3+dfsg-3
testing: 1.5.3+dfsg-3
unstable: 1.5.3+dfsg-4

versioned links

1.5.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.5.3+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.5.3+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

berkeley-express
berkeley-express-doc

action needed

Marked for autoremoval on 15 November: #1112724 high

Version 1.5.3+dfsg-3 of berkeley-express is marked for autoremoval from testing on Sat 15 Nov 2025. It is affected by #1112724. The removal of berkeley-express will also cause the removal of (transitive) reverse dependency: trinityrnaseq. You should try to prevent the removal by fixing these RC bugs.

Created: 2025-09-26 Last update: 2025-10-19 21:00

debian/patches: 5 patches to forward upstream low

Among the 5 debian patches available in version 1.5.3+dfsg-4 of the package, we noticed the following issues:

5 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-10-16 20:31

testing migrations

This package will soon be part of the auto-protobuf transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migration status for berkeley-express (1.5.3+dfsg-3 to 1.5.3+dfsg-4): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Too young, only 4 of 5 days old
- Additional info:
- ∙ ∙ Updating berkeley-express will fix bugs in testing: #1112724
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/b/berkeley-express.html
- ∙ ∙ autopkgtest for berkeley-express/1.5.3+dfsg-4: amd64: Pass, arm64: Pass, i386: Failed (not a regression) ♻ (reference ♻), ppc64el: Pass, riscv64: Pass, s390x: Pass
- ∙ ∙ Reproducible on amd64 - info ♻
- ∙ ∙ Waiting for reproducibility test results on arm64 - info ♻
- Not considered

news

[2025-10-16] Accepted berkeley-express 1.5.3+dfsg-4 (source) into unstable (Andreas Tille)
[2022-11-07] berkeley-express 1.5.3+dfsg-3 MIGRATED to testing (Debian testing watch)
[2022-11-01] Accepted berkeley-express 1.5.3+dfsg-3 (source) into unstable (Andreas Tille)
[2021-10-18] berkeley-express 1.5.3+dfsg-2 MIGRATED to testing (Debian testing watch)
[2021-10-13] Accepted berkeley-express 1.5.3+dfsg-2 (source) into unstable (Andreas Tille)
[2019-11-20] berkeley-express 1.5.3+dfsg-1 MIGRATED to testing (Debian testing watch)
[2019-11-17] Accepted berkeley-express 1.5.3+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2018-04-14] berkeley-express 1.5.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2018-04-09] Accepted berkeley-express 1.5.2+dfsg-1 (source) into unstable (Andreas Tille)
[2016-09-25] berkeley-express 1.5.1-3 MIGRATED to testing (Debian testing watch)
[2016-09-19] Accepted berkeley-express 1.5.1-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2016-08-01] berkeley-express 1.5.1-2 MIGRATED to testing (Debian testing watch)
[2016-07-26] Accepted berkeley-express 1.5.1-2 (source amd64 all) into unstable (Gert Wollny) (signed by: Andreas Tille)
[2015-10-10] berkeley-express 1.5.1-1 MIGRATED to testing (Britney)
[2015-09-29] Accepted berkeley-express 1.5.1-1 (source all amd64) into unstable, unstable (Michael R. Crusoe) (signed by: Andreas Tille)

bugs [bug history graph]

all: 1
RC: 0
I&N: 1
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian
buildd: logs, reproducibility, cross
popcon
browse source code
edit tags
other distros
screenshots
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.5.3+dfsg-3build6

Debian Package Tracker — Copyright 2013-2025 The Distro Tracker Developers

Report problems to the tracker.debian.org pseudo-package in the Debian BTS.

Documentation — Bugs — Git Repository — Contributing