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berkeley-express

Streaming quantification for high-throughput sequencing

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general
  • source: berkeley-express (main)
  • version: 1.5.3+dfsg-3
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD]
  • arch: all any
  • std-ver: 4.6.1
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.5.3+dfsg-1
  • oldstable: 1.5.3+dfsg-3
  • stable: 1.5.3+dfsg-3
  • testing: 1.5.3+dfsg-3
  • unstable: 1.5.3+dfsg-3
versioned links
  • 1.5.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.5.3+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • berkeley-express
  • berkeley-express-doc
action needed
Marked for autoremoval on 26 October due to bamtools: #1112724, #1112718 high
Version 1.5.3+dfsg-3 of berkeley-express is marked for autoremoval from testing on Sun 26 Oct 2025. It is affected by #1112724. The removal of berkeley-express will also cause the removal of (transitive) reverse dependency: trinityrnaseq. It depends (transitively) on bamtools, affected by #1112718. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-09-26 Last update: 2025-09-29 05:28
debian/patches: 5 patches to forward upstream low

Among the 5 debian patches available in version 1.5.3+dfsg-3 of the package, we noticed the following issues:

  • 5 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-02-27 20:59
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.1).
Created: 2022-12-17 Last update: 2025-02-27 13:25
testing migrations
  • This package is part of the ongoing testing transition known as auto-bamtools. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
  • This package will soon be part of the auto-protobuf transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
news
[rss feed]
  • [2022-11-07] berkeley-express 1.5.3+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2022-11-01] Accepted berkeley-express 1.5.3+dfsg-3 (source) into unstable (Andreas Tille)
  • [2021-10-18] berkeley-express 1.5.3+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2021-10-13] Accepted berkeley-express 1.5.3+dfsg-2 (source) into unstable (Andreas Tille)
  • [2019-11-20] berkeley-express 1.5.3+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-11-17] Accepted berkeley-express 1.5.3+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2018-04-14] berkeley-express 1.5.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2018-04-09] Accepted berkeley-express 1.5.2+dfsg-1 (source) into unstable (Andreas Tille)
  • [2016-09-25] berkeley-express 1.5.1-3 MIGRATED to testing (Debian testing watch)
  • [2016-09-19] Accepted berkeley-express 1.5.1-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2016-08-01] berkeley-express 1.5.1-2 MIGRATED to testing (Debian testing watch)
  • [2016-07-26] Accepted berkeley-express 1.5.1-2 (source amd64 all) into unstable (Gert Wollny) (signed by: Andreas Tille)
  • [2015-10-10] berkeley-express 1.5.1-1 MIGRATED to testing (Britney)
  • [2015-09-29] Accepted berkeley-express 1.5.1-1 (source all amd64) into unstable, unstable (Michael R. Crusoe) (signed by: Andreas Tille)
bugs [bug history graph]
  • all: 2
  • RC: 1
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
links
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  • version: 1.5.3+dfsg-3build6

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