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cnvkit

Copy number variant detection from targeted DNA sequencing

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general
  • source: cnvkit (main)
  • version: 0.9.14-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Steffen Moeller [DMD] – Olivier Sallou [DMD] – Michael R. Crusoe [DMD]
  • arch: all
  • std-ver: 4.7.4
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 0.9.8-1
  • oldstable: 0.9.9-2
  • stable: 0.9.12-1
  • testing: 0.9.14-1
  • unstable: 0.9.14-1
versioned links
  • 0.9.8-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.12-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.14-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • cnvkit
action needed
Marked for autoremoval on 04 November due to libcifpp, mercurial, petsc: #1102465, #1148339, #1149429 high
Version 0.9.14-1 of cnvkit is marked for autoremoval from testing on Wed 04 Nov 2026. It depends (transitively) on libcifpp, mercurial, petsc, affected by #1102465, #1148339, #1149429. You should try to prevent the removal by fixing these RC bugs.
Created: 2026-10-08 Last update: 2026-10-18 09:00
Problems while searching for a new upstream version high
uscan had problems while searching for a new upstream version:
In watchfile debian/watch, reading webpage
  https://api.github.com/repos/etal/cnvkit/git/matching-refs/tags/ failed: 500 Can't connect to api.github.com:443 (Temporary failure in name resolution)
Created: 2026-10-17 Last update: 2026-10-18 03:30
lintian reports 13 warnings normal
Lintian reports 13 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2026-06-04 Last update: 2026-06-04 09:00
debian/patches: 1 patch to forward upstream low

Among the 3 debian patches available in version 0.9.14-1 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2026-10-09 19:50
news
[rss feed]
  • [2026-10-11] cnvkit 0.9.14-1 MIGRATED to testing (Debian testing watch)
  • [2026-10-09] Accepted cnvkit 0.9.14-1 (source) into unstable (Santiago Vila)
  • [2026-10-09] cnvkit 0.9.13-2 MIGRATED to testing (Debian testing watch)
  • [2026-06-03] Accepted cnvkit 0.9.13-2 (source) into unstable (Santiago Vila)
  • [2026-05-18] Accepted cnvkit 0.9.13-1 (source) into unstable (Michael R. Crusoe)
  • [2025-12-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2025-02-25] cnvkit 0.9.12-1 MIGRATED to testing (Debian testing watch)
  • [2025-02-06] Accepted cnvkit 0.9.12-1 (source) into unstable (Michael R. Crusoe)
  • [2024-07-22] Accepted cnvkit 0.9.10-3~0exp0 (source) into experimental (Michael R. Crusoe)
  • [2024-04-10] cnvkit 0.9.10-2 MIGRATED to testing (Debian testing watch)
  • [2024-04-08] Accepted cnvkit 0.9.10-2 (source) into unstable (Michael R. Crusoe)
  • [2024-04-02] cnvkit 0.9.10-1 MIGRATED to testing (Debian testing watch)
  • [2024-03-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2024-03-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2024-03-05] Accepted cnvkit 0.9.10-2~0exp (source) into experimental (Michael R. Crusoe)
  • [2024-01-08] cnvkit 0.9.10-1 MIGRATED to testing (Debian testing watch)
  • [2024-01-05] Accepted cnvkit 0.9.10-1 (source) into unstable (Andreas Tille)
  • [2022-08-26] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-15] cnvkit REMOVED from testing (Debian testing watch)
  • [2022-08-13] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-13] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-09] cnvkit REMOVED from testing (Debian testing watch)
  • [2022-07-24] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-07-23] cnvkit REMOVED from testing (Debian testing watch)
  • [2021-10-17] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2021-10-15] Accepted cnvkit 0.9.9-2 (source) into unstable (Nilesh Patra)
  • [2021-09-16] cnvkit 0.9.9-1 MIGRATED to testing (Debian testing watch)
  • [2021-09-13] Accepted cnvkit 0.9.9-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-01-04] cnvkit 0.9.8-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-04] cnvkit 0.9.8-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
links
  • homepage
  • lintian (0, 13)
  • buildd: logs, reproducibility
  • popcon
  • browse source code
  • other distros
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 0.9.13-2

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