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cnvkit

Copy number variant detection from targeted DNA sequencing

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general
  • source: cnvkit (main)
  • version: 0.9.13-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Steffen Moeller [DMD] – Olivier Sallou [DMD] – Michael R. Crusoe [DMD]
  • arch: all
  • std-ver: 4.7.4
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 0.9.8-1
  • oldstable: 0.9.9-2
  • stable: 0.9.12-1
  • unstable: 0.9.13-1
versioned links
  • 0.9.8-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.12-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.9.13-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • cnvkit
action needed
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2026-05-25 Last update: 2026-05-25 19:33
lintian reports 12 warnings normal
Lintian reports 12 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2025-02-07 Last update: 2026-02-17 04:46
debian/patches: 2 patches to forward upstream low

Among the 4 debian patches available in version 0.9.13-1 of the package, we noticed the following issues:

  • 2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2026-05-19 06:00
testing migrations
  • excuses:
    • Migrates after: python-pomegranate, r-bioc-dnacopy
    • Migration status for cnvkit (- to 0.9.13-1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Autopkgtest for cnvkit/0.9.13-1: amd64: Pass, arm64: Failed ♻
    • ∙ ∙ Build-Depends(-Arch): cnvkit python-pomegranate (not considered)
    • ∙ ∙ Build-Depends(-Arch): cnvkit r-bioc-dnacopy
    • ∙ ∙ Depends: cnvkit python-pomegranate (not considered)
    • ∙ ∙ Depends: cnvkit r-bioc-dnacopy
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/c/cnvkit.html
    • ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on ppc64el: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on riscv64: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
    • ∙ ∙ Reproduced on amd64 - info
    • ∙ ∙ Reproduced on arm64 - info
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • ∙ ∙ 6 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2026-05-18] Accepted cnvkit 0.9.13-1 (source) into unstable (Michael R. Crusoe)
  • [2025-12-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2025-02-25] cnvkit 0.9.12-1 MIGRATED to testing (Debian testing watch)
  • [2025-02-06] Accepted cnvkit 0.9.12-1 (source) into unstable (Michael R. Crusoe)
  • [2024-07-22] Accepted cnvkit 0.9.10-3~0exp0 (source) into experimental (Michael R. Crusoe)
  • [2024-04-10] cnvkit 0.9.10-2 MIGRATED to testing (Debian testing watch)
  • [2024-04-08] Accepted cnvkit 0.9.10-2 (source) into unstable (Michael R. Crusoe)
  • [2024-04-02] cnvkit 0.9.10-1 MIGRATED to testing (Debian testing watch)
  • [2024-03-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2024-03-08] cnvkit REMOVED from testing (Debian testing watch)
  • [2024-03-05] Accepted cnvkit 0.9.10-2~0exp (source) into experimental (Michael R. Crusoe)
  • [2024-01-08] cnvkit 0.9.10-1 MIGRATED to testing (Debian testing watch)
  • [2024-01-05] Accepted cnvkit 0.9.10-1 (source) into unstable (Andreas Tille)
  • [2022-08-26] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-15] cnvkit REMOVED from testing (Debian testing watch)
  • [2022-08-13] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-13] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-09] cnvkit REMOVED from testing (Debian testing watch)
  • [2022-07-24] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-07-23] cnvkit REMOVED from testing (Debian testing watch)
  • [2021-10-17] cnvkit 0.9.9-2 MIGRATED to testing (Debian testing watch)
  • [2021-10-15] Accepted cnvkit 0.9.9-2 (source) into unstable (Nilesh Patra)
  • [2021-09-16] cnvkit 0.9.9-1 MIGRATED to testing (Debian testing watch)
  • [2021-09-13] Accepted cnvkit 0.9.9-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-01-04] cnvkit 0.9.8-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-04] cnvkit 0.9.8-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-01] Accepted cnvkit 0.9.8-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-06-25] cnvkit 0.9.7-1 MIGRATED to testing (Debian testing watch)
  • [2020-06-01] Accepted cnvkit 0.9.7-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-01-09] cnvkit 0.9.6-3 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
links
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  • version: 0.9.12-1build1

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