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gemmi

library for structural biology - executable

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general
  • source: gemmi (main)
  • version: 0.7.1+ds-2
  • maintainer: Debichem Team (archive) (DMD)
  • uploaders: Roland Mas [DMD] – Andrius Merkys [DMD]
  • arch: any
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 0.5.7+ds-2
  • stable: 0.6.5+ds-3
  • testing: 0.7.1+ds-1
  • unstable: 0.7.1+ds-2
versioned links
  • 0.5.7+ds-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.6.5+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.7.1+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.7.1+ds-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • gemmi
  • gemmi-dev
  • python3-gemmi (1 bugs: 0, 1, 0, 0)
action needed
Marked for autoremoval on 30 October due to robin-map: #1113470 high
Version 0.7.1+ds-1 of gemmi is marked for autoremoval from testing on Thu 30 Oct 2025. It depends (transitively) on robin-map, affected by #1113470. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-09-26 Last update: 2025-10-03 17:01
A new upstream version is available: 0.7.3 high
A new upstream version 0.7.3 is available, you should consider packaging it.
Created: 2024-05-29 Last update: 2025-10-03 17:00
1 bug tagged patch in the BTS normal
The BTS contains patches fixing 1 bug, consider including or untagging them.
Created: 2025-01-06 Last update: 2025-10-03 17:30
debian/patches: 3 patches to forward upstream low

Among the 3 debian patches available in version 0.7.1+ds-2 of the package, we noticed the following issues:

  • 3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-10-01 19:32
1 low-priority security issue in bookworm low

There is 1 open security issue in bookworm.

1 issue left for the package maintainer to handle:
  • CVE-2023-49287: (needs triaging) TinyDir is a lightweight C directory and file reader. Buffer overflows in the `tinydir_file_open()` function. This vulnerability has been patched in version 1.2.6.

You can find information about how to handle this issue in the security team's documentation.

Created: 2023-12-22 Last update: 2025-10-01 18:01
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).
Created: 2024-04-07 Last update: 2025-10-01 20:03
testing migrations
  • excuses:
    • Migration status for gemmi (0.7.1+ds-1 to 0.7.1+ds-2): Will attempt migration (Any information below is purely informational)
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/g/gemmi.html
    • ∙ ∙ autopkgtest for gemmi/0.7.1+ds-2: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Pass, s390x: Pass
    • ∙ ∙ Reproducible on amd64 - info ♻
    • ∙ ∙ Reproducible on arm64 - info ♻
    • ∙ ∙ Required age reduced by 3 days because of autopkgtest
    • ∙ ∙ 2 days old (needed 2 days)
news
[rss feed]
  • [2025-10-01] Accepted gemmi 0.7.1+ds-2 (source) into unstable (Andrius Merkys)
  • [2025-08-30] gemmi 0.7.1+ds-1 MIGRATED to testing (Debian testing watch)
  • [2025-08-28] Accepted gemmi 0.7.1+ds-1 (source) into unstable (Andrius Merkys)
  • [2025-04-25] Accepted gemmi 0.7.1+ds-1~exp1 (source) into experimental (Andrius Merkys)
  • [2025-02-06] gemmi 0.6.5+ds-3 MIGRATED to testing (Debian testing watch)
  • [2025-02-03] Accepted gemmi 0.6.5+ds-3 (source) into unstable (Andrius Merkys)
  • [2024-07-12] gemmi 0.6.5+ds-2 MIGRATED to testing (Debian testing watch)
  • [2024-07-09] Accepted gemmi 0.6.5+ds-2 (source) into unstable (Andrius Merkys)
  • [2024-05-27] gemmi 0.6.5+ds-1 MIGRATED to testing (Debian testing watch)
  • [2024-05-21] Accepted gemmi 0.6.5+ds-1 (source) into unstable (Andrius Merkys)
  • [2023-12-21] gemmi 0.6.4+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-12-19] Accepted gemmi 0.6.4+ds-1 (source) into unstable (Andrius Merkys)
  • [2023-09-13] gemmi 0.6.3+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-09-11] Accepted gemmi 0.6.3+ds-1 (source) into unstable (Andrius Merkys)
  • [2023-08-02] gemmi 0.6.2+ds-5 MIGRATED to testing (Debian testing watch)
  • [2023-07-31] Accepted gemmi 0.6.2+ds-5 (source) into unstable (Andrius Merkys)
  • [2023-07-27] Accepted gemmi 0.6.2+ds-4 (source) into unstable (Andrius Merkys)
  • [2023-07-18] gemmi 0.6.2+ds-3 MIGRATED to testing (Debian testing watch)
  • [2023-07-14] Accepted gemmi 0.6.2+ds-3 (source) into unstable (Andrius Merkys)
  • [2023-07-06] gemmi 0.6.2+ds-2 MIGRATED to testing (Debian testing watch)
  • [2023-06-22] Accepted gemmi 0.6.2+ds-2 (source) into unstable (Andrius Merkys)
  • [2023-06-12] Accepted gemmi 0.6.2+ds-1 (source) into unstable (Andrius Merkys)
  • [2023-05-02] Accepted gemmi 0.6.1+ds-1 (source) into experimental (Andrius Merkys)
  • [2023-03-28] Accepted gemmi 0.6.0+ds-1 (source) into experimental (Andrius Merkys)
  • [2022-12-30] Accepted gemmi 0.5.8+ds-1 (source) into experimental (Andrius Merkys)
  • [2022-10-18] gemmi 0.5.7+ds-2 MIGRATED to testing (Debian testing watch)
  • [2022-10-04] Accepted gemmi 0.5.7+ds-2 (source) into unstable (Andrius Merkys)
  • [2022-09-23] Accepted gemmi 0.5.7+ds-1 (source) into unstable (Andrius Merkys)
  • [2022-09-04] Accepted gemmi 0.5.6+ds-2 (source) into unstable (Andrius Merkys)
  • [2022-08-10] Accepted gemmi 0.5.6+ds-1 (source) into unstable (Andrius Merkys)
  • 1
  • 2
bugs [bug history graph]
  • all: 2
  • RC: 0
  • I&N: 2
  • M&W: 0
  • F&P: 0
  • patch: 1
links
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ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 0.6.5+ds-3
  • 1 bug

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