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genometools

versatile genome analysis toolkit

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general
  • source: genometools (main)
  • version: 1.6.5+ds-3
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Sascha Steinbiss [DMD]
  • arch: all any
  • std-ver: 4.7.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.6.1+ds-3
  • oldstable: 1.6.2+ds-3
  • old-bpo: 1.6.5+ds-2~bpo12+1
  • stable: 1.6.5+ds-2.2
  • testing: 1.6.5+ds-2.2
  • unstable: 1.6.5+ds-3
versioned links
  • 1.6.1+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.6.2+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.6.5+ds-2~bpo12+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.6.5+ds-2.2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.6.5+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • genometools
  • genometools-common
  • genometools-doc
  • libgenometools0-dev
  • libgenometools0t64
  • python3-genometools
action needed
Marked for autoremoval on 30 October: #1114122 high
Version 1.6.5+ds-2.2 of genometools is marked for autoremoval from testing on Thu 30 Oct 2025. It is affected by #1114122. The removal of genometools will also cause the removal of (transitive) reverse dependencies: aegean, genomethreader, ltrsift, vmatch. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-09-12 Last update: 2025-10-03 18:30
The VCS repository is not up to date, push the missing commits. high
vcswatch reports that the current version of the package is not in its VCS.
Either you need to push your commits and/or your tags, or the information about the package's VCS are out of date. A common cause of the latter issue when using the Git VCS is not specifying the correct branch when the packaging is not in the default one (remote HEAD branch), which is usually "master" but can be modified in salsa.debian.org in the project's general settings with the "Default Branch" field). Alternatively the Vcs-Git field in debian/control can contain a "-b <branch-name>" suffix to indicate what branch is used for the Debian packaging.
Created: 2025-09-30 Last update: 2025-09-30 21:32
Fails to build during reproducibility testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2025-09-01 Last update: 2025-10-03 17:01
Depends on packages which need a new maintainer normal
The packages that genometools depends on which need a new maintainer are:
  • lua-md5 (#995515)
    • Depends: lua-md5 lua-md5
    • Build-Depends: lua-md5-dev
  • docbook-xml (#802368)
    • Build-Depends: docbook-xml
  • docbook-xsl (#802370)
    • Build-Depends: docbook-xsl
Created: 2021-10-02 Last update: 2025-10-03 16:28
debian/patches: 9 patches to forward upstream low

Among the 10 debian patches available in version 1.6.5+ds-3 of the package, we noticed the following issues:

  • 9 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-10-01 06:03
testing migrations
  • excuses:
    • Migration status for genometools (1.6.5+ds-2.2 to 1.6.5+ds-3): Will attempt migration (Any information below is purely informational)
    • Additional info:
    • ∙ ∙ Updating genometools will fix bugs in testing: #1114122
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/g/genometools.html
    • ∙ ∙ autopkgtest for genometools/1.6.5+ds-3: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Pass, s390x: Pass
    • ∙ ∙ Reproducible on amd64 - info ♻
    • ∙ ∙ Reproducible on arm64 - info ♻
    • ∙ ∙ Required age reduced by 3 days because of autopkgtest
    • ∙ ∙ 2 days old (needed 2 days)
news
[rss feed]
  • [2025-09-30] Accepted genometools 1.6.5+ds-3 (source) into unstable (Sascha Steinbiss)
  • [2024-04-29] genometools 1.6.5+ds-2.2 MIGRATED to testing (Debian testing watch)
  • [2024-04-29] genometools 1.6.5+ds-2.2 MIGRATED to testing (Debian testing watch)
  • [2024-04-27] Accepted genometools 1.6.5+ds-2.2 (source) into unstable (Steve Langasek)
  • [2024-02-28] Accepted genometools 1.6.5+ds-2.1 (source) into unstable (Steve Langasek)
  • [2024-01-31] Accepted genometools 1.6.5+ds-2.1~exp1 (source) into experimental (Lukas Märdian)
  • [2023-11-12] Accepted genometools 1.6.5+ds-2~bpo11+1 (source all amd64) into oldstable-backports-sloppy (Debian FTP Masters) (signed by: Sascha Steinbiss)
  • [2023-11-01] Accepted genometools 1.6.5+ds-2~bpo12+1 (source all amd64) into stable-backports (Debian FTP Masters) (signed by: Sascha Steinbiss)
  • [2023-10-28] genometools 1.6.5+ds-2 MIGRATED to testing (Debian testing watch)
  • [2023-10-28] genometools 1.6.5+ds-2 MIGRATED to testing (Debian testing watch)
  • [2023-10-25] Accepted genometools 1.6.5+ds-2 (source) into unstable (Sascha Steinbiss)
  • [2023-10-24] Accepted genometools 1.6.5+ds-1 (source) into unstable (Sascha Steinbiss)
  • [2023-10-13] genometools 1.6.4+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-10-09] Accepted genometools 1.6.4+ds-1 (source) into unstable (Sascha Steinbiss)
  • [2023-09-22] genometools 1.6.3+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-09-22] genometools 1.6.3+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-09-19] Accepted genometools 1.6.3+ds-1 (source) into unstable (Sascha Steinbiss)
  • [2022-12-01] genometools 1.6.2+ds-3 MIGRATED to testing (Debian testing watch)
  • [2022-11-28] Accepted genometools 1.6.2+ds-3 (source) into unstable (Andreas Tille)
  • [2021-08-20] genometools 1.6.2+ds-2 MIGRATED to testing (Debian testing watch)
  • [2021-08-20] genometools 1.6.2+ds-2 MIGRATED to testing (Debian testing watch)
  • [2021-08-17] Accepted genometools 1.6.2+ds-2 (source) into unstable (Sascha Steinbiss)
  • [2021-06-24] Accepted genometools 1.6.2+ds-1 (source all amd64) into experimental (Sascha Steinbiss)
  • [2021-04-21] Accepted genometools 1.6.1+ds-5~exp1 (source all amd64) into experimental (Sascha Steinbiss)
  • [2020-07-29] Accepted genometools 1.6.1+ds-3~bpo10+1 (source) into buster-backports (Sascha Steinbiss)
  • [2020-07-25] genometools 1.6.1+ds-3 MIGRATED to testing (Debian testing watch)
  • [2020-07-22] Accepted genometools 1.6.1+ds-3 (source) into unstable (Sascha Steinbiss)
  • [2020-02-13] genometools 1.6.1+ds-2 MIGRATED to testing (Debian testing watch)
  • [2020-02-09] Accepted genometools 1.6.1+ds-2 (source) into unstable (Sascha Steinbiss)
  • [2020-01-27] Accepted genometools 1.6.1+ds-1~bpo10+1 (source all amd64) into buster-backports, buster-backports (Sascha Steinbiss)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 0
  • I&N: 0
  • M&W: 1
  • F&P: 0
  • patch: 0
links
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  • lintian
  • buildd: logs, reproducibility, cross
  • popcon
  • browse source code
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  • screenshots
  • debian patches
  • debci
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  • version: 1.6.5+ds-2.2

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