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gmap

spliced and SNP-tolerant alignment for mRNA and short reads

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general
  • source: gmap (main)
  • version: 2023-07-20+ds-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Étienne Mollier [DMD] – Andreas Tille [DMD] – Shaun Jackman [DMD] – Alexandre Mestiashvili [DMD]
  • arch: amd64 arm64 armel armhf i386 mips64el mipsel ppc64el
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2019-01-24-1
  • oldstable: 2021-02-22+ds-1
  • stable: 2021-12-17+ds-3
  • unstable: 2023-07-20+ds-1
versioned links
  • 2019-01-24-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2021-02-22+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2021-12-17+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2023-07-20+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • gmap
action needed
debian/patches: 2 patches with invalid metadata, 1 patch to forward upstream high

Among the 3 debian patches available in version 2023-07-20+ds-1 of the package, we noticed the following issues:

  • 2 patches with invalid metadata that ought to be fixed.
  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-08-17 09:41
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2023-07-18 Last update: 2023-09-22 17:31
lintian reports 32 warnings normal
Lintian reports 32 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2023-07-14 Last update: 2023-07-14 15:07
testing migrations
  • excuses:
    • Migration status for gmap (- to 2023-07-20+ds-1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating gmap would introduce bugs in testing: #1041451
    • ∙ ∙ missing build on arm64
    • ∙ ∙ missing build on armel
    • ∙ ∙ missing build on armhf
    • ∙ ∙ missing build on i386
    • ∙ ∙ missing build on mips64el
    • ∙ ∙ missing build on ppc64el
    • ∙ ∙ arch:arm64 not built yet, autopkgtest delayed there
    • ∙ ∙ arch:armel not built yet, autopkgtest delayed there
    • ∙ ∙ arch:armhf not built yet, autopkgtest delayed there
    • ∙ ∙ arch:i386 not built yet, autopkgtest delayed there
    • ∙ ∙ arch:ppc64el not built yet, autopkgtest delayed there
    • ∙ ∙ autopkgtest for gmap/2023-07-20+ds-1: amd64: Pass
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/g/gmap.html
    • ∙ ∙ 43 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2023-09-13] gmap REMOVED from testing (Debian testing watch)
  • [2023-08-10] Accepted gmap 2023-07-20+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2023-07-13] Accepted gmap 2023-06-01+ds-1 (source) into unstable (Andreas Tille)
  • [2022-10-06] gmap 2021-12-17+ds-3 MIGRATED to testing (Debian testing watch)
  • [2022-10-03] Accepted gmap 2021-12-17+ds-3 (source) into unstable (Étienne Mollier)
  • [2022-10-02] Accepted gmap 2021-12-17+ds-2 (source) into unstable (Étienne Mollier)
  • [2022-01-19] gmap 2021-12-17+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-01-19] gmap 2021-12-17+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-01-16] Accepted gmap 2021-12-17+ds-1 (source) into unstable (Andreas Tille)
  • [2021-08-31] gmap 2021-08-25+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-08-31] gmap 2021-08-25+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-08-28] Accepted gmap 2021-08-25+ds-1 (source) into unstable (Nilesh Patra)
  • [2021-08-18] gmap 2021-07-23+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-08-15] Accepted gmap 2021-07-23+ds-1 (source) into unstable (Nilesh Patra)
  • [2021-03-08] gmap 2021-02-22+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-02-26] Accepted gmap 2021-02-22+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-02-19] Accepted gmap 2021-02-12+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-01-20] gmap 2020-12-17+ds-2 MIGRATED to testing (Debian testing watch)
  • [2021-01-17] Accepted gmap 2020-12-17+ds-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-12-21] gmap 2020-12-17+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-12-19] Accepted gmap 2020-12-17+ds-1 (source) into unstable (Nilesh Patra)
  • [2020-11-27] gmap 2020-11-20+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-11-24] Accepted gmap 2020-11-20+ds-1 (source) into unstable (Nilesh Patra)
  • [2020-11-22] gmap 2020-11-14+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-11-20] Accepted gmap 2020-11-14+ds-1 (source) into unstable (Nilesh Patra)
  • [2020-11-01] gmap 2020-10-27+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-10-30] Accepted gmap 2020-10-27+ds-1 (source) into unstable (Nilesh Patra)
  • [2020-10-23] gmap 2020-10-14+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-10-21] Accepted gmap 2020-10-14+ds-1 (source) into unstable (Nilesh Patra)
  • [2020-10-16] gmap 2020-10-12+ds-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 1
  • I&N: 0
  • M&W: 0
  • F&P: 0
  • patch: 0
links
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  • buildd: logs, cross
  • popcon
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  • version: 2021-12-17+ds-3

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