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hisat2

graph-based alignment of short nucleotide reads to many genomes

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general

source: hisat2 (main)
version: 2.2.1-5
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Michael R. Crusoe [DMD]
arch: all any
std-ver: 4.6.1
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 2.1.0-2
oldstable: 2.2.1-2
stable: 2.2.1-4
testing: 2.2.1-5
unstable: 2.2.1-5

versioned links

2.1.0-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.2.1-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.2.1-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.2.1-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

hisat2
python3-hisat2

action needed

lintian reports 10 warnings normal

Lintian reports 10 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2024-07-09 Last update: 2025-04-10 14:00

debian/patches: 5 patches to forward upstream low

Among the 9 debian patches available in version 2.2.1-5 of the package, we noticed the following issues:

5 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2024-07-09 21:34

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.1).

Created: 2022-12-17 Last update: 2025-02-27 13:24

news

[2024-07-14] hisat2 2.2.1-5 MIGRATED to testing (Debian testing watch)
[2024-07-09] Accepted hisat2 2.2.1-5 (source) into unstable (Michael R. Crusoe)
[2023-01-22] Accepted hisat2 2.2.1-5~0exp (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2022-10-20] hisat2 2.2.1-4 MIGRATED to testing (Debian testing watch)
[2022-10-14] Accepted hisat2 2.2.1-4 (source) into unstable (Andreas Tille)
[2021-10-03] hisat2 2.2.1-3 MIGRATED to testing (Debian testing watch)
[2021-09-28] Accepted hisat2 2.2.1-3 (source) into unstable (Andreas Tille)
[2021-02-02] hisat2 2.2.1-2 MIGRATED to testing (Debian testing watch)
[2021-01-27] Accepted hisat2 2.2.1-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-11-29] Accepted hisat2 2.2.1-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-08-13] hisat2 2.2.1-1 MIGRATED to testing (Debian testing watch)
[2020-08-11] Accepted hisat2 2.2.1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-05-09] hisat2 2.2.0-2 MIGRATED to testing (Debian testing watch)
[2020-05-06] Accepted hisat2 2.2.0-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-04-19] Accepted hisat2 2.2.0-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-02-16] hisat2 2.1.0-4 MIGRATED to testing (Debian testing watch)
[2020-02-11] Accepted hisat2 2.1.0-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-02-11] Accepted hisat2 2.1.0-3 (source amd64 all) into unstable, unstable (Michael R. Crusoe) (signed by: Andreas Tille)
[2020-01-08] hisat2 2.1.0-2nopython3hisat3 MIGRATED to testing (Debian testing watch)
[2020-01-04] Accepted hisat2 2.1.0-2nopython3hisat3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-01-04] Accepted hisat2 2.1.0-2nopython3hisat2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2018-09-29] hisat2 2.1.0-2 MIGRATED to testing (Debian testing watch)
[2018-09-24] Accepted hisat2 2.1.0-2 (source) into unstable (Andreas Tille)
[2017-09-09] hisat2 2.1.0-1 MIGRATED to testing (Debian testing watch)
[2017-09-04] Accepted hisat2 2.1.0-1 (source amd64) into unstable (Andreas Tille)
[2016-12-20] hisat2 2.0.5-1 MIGRATED to testing (Debian testing watch)
[2016-12-09] Accepted hisat2 2.0.5-1 (source amd64) into unstable (Andreas Tille)
[2016-08-31] hisat2 2.0.4-2 MIGRATED to testing (Debian testing watch)
[2016-08-25] Accepted hisat2 2.0.4-2 (source amd64) into unstable (Sascha Steinbiss)
[2016-08-24] hisat2 2.0.4-1 MIGRATED to testing (Debian testing watch)

1
2

bugs [bug history graph]

all: 2
RC: 0
I&N: 1
M&W: 1
F&P: 0
patch: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 2.2.1-5

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