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hisat2

graph-based alignment of short nucleotide reads to many genomes

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general

source: hisat2 (main)
version: 2.1.0-2
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Michael R. Crusoe [DMD]
arch: amd64 kfreebsd-amd64
std-ver: 4.2.1
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 2.0.5-1
stable: 2.1.0-2
testing: 2.1.0-2
unstable: 2.1.0-2

versioned links

2.0.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.1.0-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

hisat2

action needed

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 2.1.0-3, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit e6ef2721c207a236cb982707c958d3a704e2ee58
Author: Steffen Möller <moeller@debian.org>
Date:   Sat Sep 21 11:47:25 2019 +0000

    Added ref to conda

commit c0b81c097681857c641e95fab800264cd86e5b97
Author: Andreas Tille <tille@debian.org>
Date:   Fri Aug 2 18:40:11 2019 +0200

    Put annonymous entry under my name

commit 5f7e59b83641cadee94d6cee818ebddaf0f11cb0
Author: Andreas Tille <tille@debian.org>
Date:   Fri Aug 2 18:39:44 2019 +0200

    Merge two changelog entries

commit 2dadc91f9eef92e10ceec5f362a8ba1a0bb47791
Author: Andreas Tille <tille@debian.org>
Date:   Fri Aug 2 18:26:53 2019 +0200

    Fix autopkgtest

commit 71ce31a95e932ab36b6d5d03cccc44850f1cd0b4
Author: Andreas Tille <tille@debian.org>
Date:   Fri Aug 2 18:26:12 2019 +0200

    Recommends: bcftools, samtools

commit 0b2d1a43aec9d711ca2de70dda0a8d918601c7d4
Author: Andreas Tille <tille@debian.org>
Date:   Fri Aug 2 18:24:04 2019 +0200

    Fix typo

commit 222893940197850cb998b97544b931b35a980cdb
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 16:32:07 2019 +0100

    That is the problem

commit 35f00e8c5eaf96c293faa9d48c8619e6f3c77114
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 16:16:02 2019 +0100

    It may make a difference

commit 40050f07ec8cb0482a4ba7547eee185f162760d7
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 16:13:28 2019 +0100

    Revert initial folder name

commit af749803c7d04d49825d2ed2d85794446964986f
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:58:51 2019 +0100

    Fix problematic test cases

commit 6e472cd7c5ca0711dc52ea62bc699344a1ed8d30
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:30:16 2019 +0100

    Fix comma syntax mistake for dependencies

commit e49ff60dbd881cc25cc599bbeb0b99fbdf44776a
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:28:35 2019 +0100

    Add the test dependencies

commit 2a8654465e30297388a0d8be92895d20e89b1f96
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:28:09 2019 +0100

    Add the suite tests

commit 58054b964da0e3eaa538934537760fab4bc5e305
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:18:40 2019 +0100

    Bump changelog

commit 74e387eebc507dea7f3b68bdf15c65390ef43e43
Author: Saira Hussain <saira.h0213@zoho.com>
Date:   Fri Aug 2 15:17:42 2019 +0100

    Add autopkgtests template

commit 8c33f70533310cf602c9028e42994a262987a36a
Author: Steffen Moeller <moeller@debian.org>
Date:   Thu Apr 18 00:55:00 2019 +0200

    Extending support for Python files of hisat2
    
    bcbio needs them to build-testing

commit cc4f2173ebdc7ef9c2c60239e6eea91272777fe4
Author: Andreas Tille <tille@debian.org>
Date:   Mon Mar 25 11:37:02 2019 +0100

    Add lintian override since we need the .py extension for usage in bcbio

commit 656051ed9c758366dcbd60cb2d70956115708702
Author: Andreas Tille <tille@debian.org>
Date:   Mon Mar 25 11:36:03 2019 +0100

    Install hisat2_extract_splice_sites.py

commit d721a700ee92e0c0776f3202759f67a366f3324a
Author: Steffen Möller <moeller@debian.org>
Date:   Sun Mar 10 13:34:17 2019 +0000

    Updated RRID in d/u/metadata

Created: 2019-03-10 Last update: 2019-10-19 17:12

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.4.1 instead of 4.2.1).

Created: 2018-12-23 Last update: 2019-09-29 23:39

news

[2018-09-29] hisat2 2.1.0-2 MIGRATED to testing (Debian testing watch)
[2018-09-24] Accepted hisat2 2.1.0-2 (source) into unstable (Andreas Tille)
[2017-09-09] hisat2 2.1.0-1 MIGRATED to testing (Debian testing watch)
[2017-09-04] Accepted hisat2 2.1.0-1 (source amd64) into unstable (Andreas Tille)
[2016-12-20] hisat2 2.0.5-1 MIGRATED to testing (Debian testing watch)
[2016-12-09] Accepted hisat2 2.0.5-1 (source amd64) into unstable (Andreas Tille)
[2016-08-31] hisat2 2.0.4-2 MIGRATED to testing (Debian testing watch)
[2016-08-25] Accepted hisat2 2.0.4-2 (source amd64) into unstable (Sascha Steinbiss)
[2016-08-24] hisat2 2.0.4-1 MIGRATED to testing (Debian testing watch)
[2016-08-19] Accepted hisat2 2.0.4-1 (source amd64) into unstable, unstable (Michael R. Crusoe) (signed by: Sascha Steinbiss)

bugs [bug history graph]

all: 0

links

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version: 2.1.0-2

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