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general

source: htslib (main)
version: 1.9-3
maintainer: Debian Med Packaging Team (archive) [DMD] [LowNMU]
uploaders: Charles Plessy [DMD] – Michael R. Crusoe [DMD] [dm] – Andreas Tille [DMD]
arch: all alpha amd64 arm64 armel armhf hppa ia64 kfreebsd-amd64 m68k mips mips64el powerpc powerpcspe ppc64 ppc64el s390x sh4 sparc64 x32
std-ver: 4.2.1
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 1.1-1
old-bpo: 1.3.2-2~bpo8+1
stable: 1.3.2-2
stable-bpo: 1.7-2~bpo9+1
testing: 1.7-2
unstable: 1.9-3

versioned links

1.1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.3.2-2~bpo8+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.3.2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7-2~bpo9+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.9-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

htslib-test
libhts-dev
libhts-private-dev
libhts2
tabix

action needed

3 security issues in sid high

There are 3 open security issues in sid.

3 important issues:

CVE-2018-13843: An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c.
CVE-2018-13845: An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
CVE-2018-13844: An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c.

Please fix them.

Created: 2018-07-11 Last update: 2018-10-15 07:11

3 security issues in buster high

There are 3 open security issues in buster.

3 important issues:

CVE-2018-13843: An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c.
CVE-2018-13845: An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
CVE-2018-13844: An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c.

Please fix them.

Created: 2018-07-11 Last update: 2018-10-15 07:11

lintian reports 3 errors and 6 warnings high

Lintian reports 3 errors and 6 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2015-03-07 Last update: 2018-09-14 06:40

1 new commit since last upload, time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit 024c3225f88036a80ad0e71575a335f876eae1ca
Author: Michael R. Crusoe <crusoe@ucdavis.edu>
Date:   Mon Oct 15 01:42:25 2018 -0700

    re-add mipsel

Created: 2018-10-15 Last update: 2018-10-16 06:13

Depends on packages which need a new maintainer normal

The packages that htslib depends on which need a new maintainer are:

dh-exec (#851746)
- Build-Depends: dh-exec

Created: 2017-12-02 Last update: 2018-10-16 04:23

4 ignored security issues in jessie low

There are 4 open security issues in jessie.

4 issues skipped by the security teams:

CVE-2018-13843: An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c.
CVE-2018-13845: An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
CVE-2018-13844: An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c.
CVE-2017-1000206: samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution

Please fix them.

Created: 2017-11-18 Last update: 2018-10-15 07:11

4 ignored security issues in stretch low

There are 4 open security issues in stretch.

4 issues skipped by the security teams:

CVE-2018-13843: An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c.
CVE-2018-13845: An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
CVE-2018-13844: An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c.
CVE-2017-1000206: samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution

Please fix them.

Created: 2017-11-18 Last update: 2018-10-15 07:11

testing migrations

excuses:
- Too young, only 1 of 21 days old
- missing build on i386: libhts-dev, libhts2, tabix (from 1.7-2)
- missing build on mipsel: libhts-dev, libhts2, tabix (from 1.9-2)
- old binaries left on all: htslib-test, libhts-private-dev (from 1.9-2); htslib-test, libhts-private-dev (from 1.7-2) (but ignoring cruft, so nevermind)
- Piuparts tested OK - https://piuparts.debian.org/sid/source/h/htslib.html
- autopkgtest for python-pysam/0.14+ds-2: amd64: Regression ♻
- Required age increased by 16 days because of autopkgtest
- Not considered

news

[2018-10-14] Accepted htslib 1.9-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2018-09-12] Accepted htslib 1.9-2 (source) into unstable (Andreas Tille)
[2018-07-28] Accepted htslib 1.9-1 (source all amd64) into experimental (Steffen Moeller)
[2018-05-22] Accepted htslib 1.7-2~bpo9+1 (source all amd64) into stretch-backports, stretch-backports (Andreas Tille)
[2018-05-03] Accepted htslib 1.8-1 (source) into experimental (Andreas Tille)
[2018-02-19] htslib 1.7-2 MIGRATED to testing (Debian testing watch)
[2018-02-19] htslib 1.7-2 MIGRATED to testing (Debian testing watch)
[2018-02-14] Accepted htslib 1.7-2 (source) into unstable (Andreas Tille)
[2018-02-12] Accepted htslib 1.7-1 (source all amd64) into unstable (Steffen Moeller)
[2017-12-27] htslib 1.6-4 MIGRATED to testing (Debian testing watch)
[2017-12-21] Accepted htslib 1.6-4 (source) into unstable (Graham Inggs)
[2017-12-20] Accepted htslib 1.6-3 (source) into unstable (Graham Inggs)
[2017-12-20] htslib 1.6-2 MIGRATED to testing (Debian testing watch)
[2017-12-14] Accepted htslib 1.6-2 (source) into unstable (Andreas Tille)
[2017-12-11] Accepted htslib 1.6-1 (source) into experimental (Andreas Tille)
[2017-12-11] Accepted htslib 1.5-6 (source) into unstable (Andreas Tille)
[2017-12-10] Accepted htslib 1.5-5 (source all amd64) into unstable, unstable (Andreas Tille)
[2017-11-26] htslib 1.5-4 MIGRATED to testing (Debian testing watch)
[2017-11-20] Accepted htslib 1.5-4 (source) into unstable (Andreas Tille)
[2017-11-10] Accepted htslib 1.5-3 (source) into unstable (Diane Trout)
[2017-11-08] Accepted htslib 1.5-2 (source all amd64) into unstable (Andreas Tille)
[2017-10-31] htslib 1.5-1 MIGRATED to testing (Debian testing watch)
[2017-08-04] Accepted htslib 1.5-1 (source all amd64) into unstable (Matthias Klumpp)
[2017-07-24] htslib 1.4.1-5 MIGRATED to testing (Debian testing watch)
[2017-07-23] Accepted htslib 1.4.1-5 (source) into unstable (Graham Inggs)
[2017-07-17] Accepted htslib 1.4.1-4 (source) into unstable (Graham Inggs)
[2017-07-17] Accepted htslib 1.4.1-3 (source all amd64) into unstable (Sascha Steinbiss)
[2017-06-18] Accepted htslib 1.4.1-2 (source) into unstable (Andreas Tille)
[2017-06-18] Accepted htslib 1.4.1-1 (source all amd64) into unstable (Andreas Tille)
[2017-06-09] Accepted htslib 1.3.2-2~bpo8+1 (source amd64 all) into jessie-backports->backports-policy, jessie-backports (Andreas Tille)

1
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bugs [bug history graph]

all: 0

links

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lintian (3, 6)
buildd: logs, clang, reproducibility
popcon
debci
browse source code
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security tracker

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version: 1.7-2

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