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general
  • source: htslib (main)
  • version: 1.11-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD] – Charles Plessy [DMD] – Andreas Tille [DMD] – Steffen Moeller [DMD]
  • arch: all any
  • std-ver: 4.5.1
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.1-1
  • oldstable: 1.3.2-2
  • old-bpo: 1.7-2~bpo9+1
  • stable: 1.9-11
  • testing: 1.11-4
  • unstable: 1.11-4
versioned links
  • 1.1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.3.2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.7-2~bpo9+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.9-11: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.11-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • htslib-test
  • libhts-dev
  • libhts3
  • tabix
action needed
Depends on packages which need a new maintainer normal
The packages that htslib depends on which need a new maintainer are:
  • dh-exec (#851746)
    • Build-Depends: dh-exec
Created: 2019-11-22 Last update: 2021-01-26 02:32
Does not build reproducibly during testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2020-07-07 Last update: 2021-01-25 23:32
4 ignored security issues in stretch low
There are 4 open security issues in stretch.
4 issues skipped by the security teams:
  • CVE-2017-1000206: samtools htslib library version 1.4.0 and earlier is vulnerable to buffer overflow in the CRAM rANS codec resulting in potential arbitrary code execution
  • CVE-2018-13843: ** DISPUTED ** An issue has been found in HTSlib 1.8. It is a memory leak in bgzf_getline in bgzf.c. NOTE: the software maintainer's position is that the "failure to free memory" can be fixed in applications that use the HTSlib library (such as test/test_bgzf.c in the original report) and is not a library issue.
  • CVE-2018-13844: An issue has been found in HTSlib 1.8. It is a memory leak in fai_read in faidx.c.
  • CVE-2018-13845: An issue has been found in HTSlib 1.8. It is a buffer over-read in sam_parse1 in sam.c.
Please fix them.
Created: 2017-11-18 Last update: 2021-01-05 07:05
testing migrations
  • This package will soon be part of the auto-openssl transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
news
[rss feed]
  • [2021-01-05] htslib 1.11-4 MIGRATED to testing (Debian testing watch)
  • [2021-01-02] Accepted htslib 1.11-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-12-26] htslib 1.11-3 MIGRATED to testing (Debian testing watch)
  • [2020-12-24] Accepted htslib 1.11-3 (source) into unstable (Andreas Tille)
  • [2020-10-07] htslib 1.11-2 MIGRATED to testing (Debian testing watch)
  • [2020-10-05] Accepted htslib 1.11-2 (source) into unstable (Andreas Tille)
  • [2020-10-01] Accepted htslib 1.11-1 (source) into unstable (Andreas Tille)
  • [2020-08-05] htslib 1.10.2-5 MIGRATED to testing (Debian testing watch)
  • [2020-08-03] Accepted htslib 1.10.2-5 (source) into unstable (Andreas Tille)
  • [2020-07-07] htslib 1.10.2-4 MIGRATED to testing (Debian testing watch)
  • [2020-07-04] Accepted htslib 1.10.2-4 (source) into unstable (Steffen Moeller)
  • [2020-02-16] htslib 1.10.2-3 MIGRATED to testing (Debian testing watch)
  • [2020-02-13] Accepted htslib 1.10.2-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-01-10] htslib 1.10.2-2 MIGRATED to testing (Debian testing watch)
  • [2019-12-26] Accepted htslib 1.10.2-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-20] Accepted htslib 1.10.2-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-18] Accepted htslib 1.10.1-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-17] Accepted htslib 1.10.1-1 (source) into unstable (Andreas Tille)
  • [2019-12-16] Accepted htslib 1.10-2 (source all amd64) into unstable, unstable (Michael R. Crusoe) (signed by: Andreas Tille)
  • [2019-12-13] Accepted htslib 1.10-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-12] htslib 1.9-12 MIGRATED to testing (Debian testing watch)
  • [2019-12-09] Accepted htslib 1.9-12 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-05-19] htslib 1.9-11 MIGRATED to testing (Debian testing watch)
  • [2019-04-24] Accepted htslib 1.9-11 (source) into unstable (Andreas Tille)
  • [2019-03-03] htslib 1.9-10 MIGRATED to testing (Debian testing watch)
  • [2019-01-16] Accepted htslib 1.9-10 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-16] Accepted htslib 1.9-10~1libdeflate (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-15] Accepted htslib 1.9-10~0libdeflate (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-15] Accepted htslib 1.9-9 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-07] Accepted htslib 1.9-9~floatingpoint0 (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 0
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
links
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  • popcon
  • browse source code
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  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.11-4
  • 1 bug

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