Debian Package Tracker

general

source: jalview (main)
version: 2.7.dfsg-5
maintainer: Debian Java Maintainers (archive) (DMD)
uploaders: Vincent Fourmond [DMD]
arch: all
std-ver: 3.9.7
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 2.7.dfsg-4
unstable: 2.7.dfsg-5

versioned links

2.7.dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.7.dfsg-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

jalview

action needed

A new upstream version is available: 2.11.1.3 high

A new upstream version 2.11.1.3 is available, you should consider packaging it.

Created: 2020-06-29 Last update: 2021-01-20 22:36

Standards version of the package is outdated. high

The package is severely out of date with respect to the Debian Policy. The package should be updated to follow the last version of Debian Policy (Standards-Version 4.5.1 instead of 3.9.7).

Created: 2016-04-09 Last update: 2020-11-17 05:41

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2017-01-29 Last update: 2021-01-21 02:34

Depends on packages which need a new maintainer normal

The packages that jalview depends on which need a new maintainer are:

libjswingreader-java (#897299)
- Build-Depends: libjswingreader-java
- Depends: libjswingreader-java
libvamsas-client-java (#897300)
- Build-Depends: libvamsas-client-java
- Depends: libvamsas-client-java

Created: 2019-11-22 Last update: 2021-01-21 01:06

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 2.11.1.3+dfsg1-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 659217a76d4392eec5eac5ebc26b350b6e7b8b6b
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:44:47 2020 +0100

    Updating changelog

commit c9f30def1d4d765e5cca8ade89af1fa245d172ce
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:16:16 2020 +0100

    Adding autopkgtests

commit 28a79175c4e5e9f0c5972c3a6454602da423a582
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Dec 17 12:15:57 2020 +0100

    Modifying files to care for a version number like ...+dfsg1

commit 17ea5ec200d76bb1edf879f88442e20024c052de
Merge: 8d73691 9245548
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:08:14 2020 +0100

    Update upstream source from tag 'upstream/2.11.1.3+dfsg1'
    
    Update to upstream version '2.11.1.3+dfsg1'
    with Debian dir 0e114cf2bd93fdf39d2c8542db8df52a19931c86

commit 9245548c4821c559b4d134ca7cb257085bc18722
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:07:52 2020 +0100

    New upstream version 2.11.1.3+dfsg1

commit 8d73691b1903ddb16327ccab04c64f46e04df730
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:06:56 2020 +0100

    Preparing files to reintegrate the examples/ folder in the source package

commit 2a985843cd91cc4bed830cf2d4311a81ebb4621f
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Tue Dec 15 23:06:22 2020 +0100

    Updating changelog

commit 14ef8756107778ae78c68dacc0bbe26866006b48
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 27 22:50:07 2020 +0100

    Acknowledging the two licences of files in src/jalview/ext/android

commit c492894f9bbc5d53878a0d717bcfb6e420c32515
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 26 21:55:25 2020 +0100

    Adding a jar of libjaxws-java in the classpath for the web services

commit 5000b090b62cc4accea5e9454df1cd1dbe4faace
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Wed Nov 25 22:08:33 2020 +0100

    Deactivating Google Analytics, using a non-packaged and improperly licensed software

commit 7aca93e0adaf89965a6ef71b5352245d1923be5e
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sun Nov 22 15:30:17 2020 +0100

    Adding metadata relative to Bug tracking and Repository

commit 67d8496565013dc8f506ddb14302ff2df3fa3aab
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sun Nov 22 15:29:47 2020 +0100

    Using secure URI in d/watch

commit 5931eec3e7ca33eeb2af5fced032f34283c0edb6
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 22:09:48 2020 +0100

    Correcting mispellings in manpage

commit d85f1dc445a1feeeb61e44c4345b689aa4eb95ad
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 22:08:59 2020 +0100

    Putting the documentation in the resources tm embed it into the jar

commit f258265f62d31a6c46876a73042d9daae542e955
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:57:23 2020 +0100

    Adding missing dependency libcommons-discovery-java

commit fdc74aae6f20e5bf0ec87ca38d7c2d8254321aea
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:33:23 2020 +0100

    Including an upstream patch for a test in MemorySettingTest.java

commit dd65224aa9aee2bb5e4dc47772e527ccc6ec588f
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:00:36 2020 +0100

    Adding missing libjersey1-core-java dependency

commit 4f3569097043969f4d4c5c7d5ba3e51da5d8ada3
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Sat Nov 21 14:00:10 2020 +0100

    Updating manpage

commit a04d9948e08415d1161e540a7abebae3f538d7f2
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 23:45:12 2020 +0100

    Modifying the jar launcher by setting properly the jar manifest

commit f8bed6dd512d121bc2418e724d04b86e707b14d9
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 22:51:30 2020 +0100

    Rules-Requires-Root: no, and acknowledging Standards version bump to 4.5.1

commit 9d9046d59afa65564f328fc274b6b81777c47fd0
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 22:50:17 2020 +0100

    Providing a FreeDesktop entry instead of former menu entry

commit 939cca8adde971d4c8410d9972cede05686fd310
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 17:17:52 2020 +0100

    Refreshing d/copyright

commit db8b77b87645d9d3093a2440b6f61fc46c644b73
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:26:29 2020 +0100

    Calling dh_clean in its override in d/rules

commit b0adab8a72ea120a4c414de9118bbef4c705c3b8
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:26:01 2020 +0100

    Setting myself as uploader, removing former uploader who orphaned jalview

commit 58a35c2470cb69c56d0bab6be262f8c41cf741e7
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 11:24:21 2020 +0100

    Remove patch for Jmol and ant

commit 8106b4f5ddde08e8b619fb0ac4db538c6d7b4edd
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Fri Nov 20 10:58:45 2020 +0100

    Updating Vcs-* and Homepage fields in d/control

commit 2a77c81a16c50383369c95b43e460a712d4c741a
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 18:55:56 2020 +0100

    Making the build with Maven instead of upstream's gradle

commit 47b335674745937b888222c339412df3f15b5009
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:46:35 2020 +0100

    Switching from cdbs to dh

commit 99421fab4e7c880a8dd849ea6bb7f74a57c320b7
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:43:47 2020 +0100

    Updating build-dependencies list and d/jalview.classpath

commit 0a2f4dc43440d5a39e28998ebdeedf9ebba7c202
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:22:00 2020 +0100

    Deactivate a failing corner-case assertion in a test

commit f3a97e9db3d88f6ccf2bc647040370c0a59a1276
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:20:44 2020 +0100

    classgraph is not needed for a Debian run

commit 2ae61807f9017af28983c9940eae7c86870536fa
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:19:53 2020 +0100

    Deactivating getdown, which is used to update software while running

commit a060eeae35a8529479ab770fad308f04c6c440c8
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:18:43 2020 +0100

    Calling JSONObject correctly

commit 1969b404be331ffed11a1b74aa7c02d014f51f15
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:17:35 2020 +0100

    Get rid of quaqua, which cannot be distributed on a non-Mac platform

commit ab9c2da24371370581964cde418624958689667a
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:16:51 2020 +0100

    Correct invocation of org.jfree

commit bb3a5751bf69418bba863bdf7972992609c4274b
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:06:10 2020 +0100

    Upstream has switched from ant to gradle

commit 38c143b18ff3881735000fd44b77d906e8eb6621
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:04:31 2020 +0100

    Depending on debhelper-compat 13

commit 8778e7b5f953ad161b21fa034664bbba2f2da4c1
Merge: 12c64ce a468480
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:03:18 2020 +0100

    Update upstream source from tag 'upstream/2.11.1.3+dfsg'
    
    Update to upstream version '2.11.1.3+dfsg'
    with Debian dir c80e10fc3578965b69064981dfa73553cddd7e73

commit a468480355446861b3aab267fefa71968d426bda
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 17:02:53 2020 +0100

    New upstream version 2.11.1.3+dfsg

commit 12c64cee95a1de080d8ab4fce60be5768f331e54
Author: Pierre Gruet <pgtdebian@free.fr>
Date:   Thu Nov 19 16:58:50 2020 +0100

    Using version 4 in d/watch to remove files

commit b26de480bf41735d88cbb412e2ec4f3ab3f7d41b
Author: Steffen Möller <moeller@debian.org>
Date:   Sat Sep 21 12:42:28 2019 +0000

    Added ref to conda, RRID->SciCrunch

commit 612ac7545dcc4dd8ac8e59950c7f1804412f5823
Author: Steffen Möller <moeller@debian.org>
Date:   Thu Sep 6 20:15:21 2018 +0000

    d/u/metadata: syntax fixed(?) and URLs added

commit 7ebf5265cb3fabfc3b60b743f305c48e8fb6baeb
Author: Steffen Moeller <moeller@debian.org>
Date:   Sat Sep 16 02:33:35 2017 +0200

    Added prior forgotten PMID in metadata

commit 327a769216ec16e8fd441770145571400e6aa47c
Author: Steffen Moeller <moeller@debian.org>
Date:   Sat Sep 16 02:32:17 2017 +0200

    Added references to registries.

commit cb9eccd472bee2752afd80d3523eadd73cd3000a
Author: Steffen Moeller <moeller@debian.org>
Date:   Tue Jan 17 23:28:52 2017 +0100

    Corrected EDAM annotation file

commit ee58895d2192f1ea24aad4ea18b38fd6455dd1f4
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:26:02 2017 +0100

    Corrected EDAM annotation file

commit 81d4ee52e92edd750383831611737d718d47a34f
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:25:40 2017 +0100

    Corrected EDAM annotation file

commit 13c8123738745392311585912da6299833793d90
Author: Steffen Moeller <moeller@debian.org>
Date:   Sun Jan 15 19:24:39 2017 +0100

    Corrected EDAM annotation file

commit 8052be380667d6a62a565a31b666488660cc006d
Author: Andreas Tille <tille@debian.org>
Date:   Sun Dec 11 09:47:18 2016 +0100

    enforce LC_ALL=C.UTF-8 to cope with UTF-8 characters

commit f87e863f65a8903380e4405f253f3e3fc9c8cafc
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:28:19 2016 +0100

    Use libbio4-java, add mkdir so building from git works

commit f6ce144f1ee9a52c39b164e3fbf896720bc861d9
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:12:31 2016 +0100

    Update d/changelog, patches, and add some dependencies
    
    Others are not documented in Debian, added to d/TODO

commit e643aaa940725d05c9e2c5827d9b05f7bd0cdb6b
Merge: ef4e6f6 7eb4c6f
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:11:32 2016 +0100

    Merge tag 'upstream/2.10.1.dfsg'
    
    Upstream version 2.10.1.dfsg
    
    # gpg: Signature made Sat 10 Dec 2016 16:11:29 CET
    # gpg:                using RSA key 3667486A326DB2766D255546860DEF3B8F650B79
    # gpg: Good signature from "Ximin Luo <infinity0@pwned.gg>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@torproject.org>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@freenetproject.org>" [ultimate]
    # gpg:                 aka "Ximin Luo <infinity0@debian.org>" [ultimate]
    # gpg:                 aka "Satoshi Nakamoto (www.bitcoin.org) <satoshin@gmx.com>" [ultimate]

commit 7eb4c6f9eac0c765349c6e1fdd249e1ff1055fa5
Author: Ximin Luo <infinity0@debian.org>
Date:   Sat Dec 10 16:11:25 2016 +0100

    New upstream version 2.10.1.dfsg

commit ef4e6f6352b4638610a2899c860d6e145dcb393a
Author: Steffen Moeller <moeller@debian.org>
Date:   Wed Jun 22 21:35:07 2016 +0200

    Reintroduced debian/upstream/edam annotation

commit 3415f678bf3068c41f3581aea21b41b731f9b044
Author: Michael R. Crusoe <crusoe@ucdavis.edu>
Date:   Sun Feb 7 12:25:06 2016 -0800

    Imported Upstream version 2.9+dfsg

The Vcs URL is using anonscm.debian.org. Please update it for the move to salsa.debian.org.

Created: 2017-12-03 Last update: 2021-01-20 22:06

ITA: Someone intends to adopt this package. normal

This package has been orphaned, but someone intends to maintain it. Please see bug number #897294 for more information.

Created: 2018-05-01 Last update: 2020-11-20 23:37

lintian reports 4 warnings normal

Lintian reports 4 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2020-09-21 Last update: 2020-09-21 06:02

testing migrations

excuses:
- Migration status for jalview (- to 2.7.dfsg-5): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- Updating jalview introduces new bugs: #849025
- Not built on buildd: arch all binaries uploaded by apo@gambaru.de, a new source-only upload is needed to allow migration
- Additional info:
- Piuparts tested OK - https://piuparts.debian.org/sid/source/j/jalview.html
- 1748 days old (needed 5 days)
- Not considered

news

[rss feed]

[2017-01-28] jalview REMOVED from testing (Debian testing watch)
[2016-05-03] Accepted jalview 2.7.dfsg-2+deb7u1 (source all) into oldstable (signed by: Markus Koschany)
[2016-04-14] jalview 2.7.dfsg-5 MIGRATED to testing (Debian testing watch)
[2016-04-08] Accepted jalview 2.7.dfsg-5 (source all) into unstable (Markus Koschany)
[2014-09-23] jalview 2.7.dfsg-4 MIGRATED to testing (Britney)
[2014-09-12] Accepted jalview 2.7.dfsg-4 (source all) into unstable (Emmanuel Bourg)
[2013-11-15] jalview 2.7.dfsg-3 MIGRATED to testing (Debian testing watch)
[2013-11-04] Accepted jalview 2.7.dfsg-3 (source all) (Emmanuel Bourg) (signed by: Niels Thykier)
[2011-11-18] jalview 2.7.dfsg-2 MIGRATED to testing (Debian testing watch)
[2011-11-07] Accepted jalview 2.7.dfsg-2 (source all) (Vincent Fourmond)
[2011-10-22] Accepted jalview 2.7.dfsg-1 (source all) (Vincent Fourmond)

bugs [bug history graph]

all: 1
RC: 1
I&N: 0
M&W: 0
F&P: 0
patch: 0

links

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