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khmer

in-memory DNA sequence kmer counting, filtering & graph traversal

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general
  • source: khmer (main)
  • version: 2.1.2+dfsg-10
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD] – Kevin Murray [DMD]
  • arch: all amd64
  • std-ver: 4.6.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.0+dfsg-10
  • oldstable: 2.1.2+dfsg-6
  • stable: 2.1.2+dfsg-8
  • unstable: 2.1.2+dfsg-10
versioned links
  • 2.0+dfsg-10: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.1.2+dfsg-6: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.1.2+dfsg-8: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.1.2+dfsg-10: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • khmer
  • khmer-common
  • liboxli-dev
  • liboxli1
action needed
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:01:41
    Last run: 2022-08-11T12:07:06.000Z
    Previous status: fail

  • testing: fail (log)
    The tests ran in 0:01:35
    Last run: 2022-04-24T16:12:22.000Z
    Previous status: fail

  • stable: pass (log)
    The tests ran in 0:01:08
    Last run: 2022-08-04T14:20:31.000Z
    Previous status: pass

Created: 2022-04-01 Last update: 2022-08-19 22:19
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2022-04-25 Last update: 2022-08-19 22:12
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 2.1.2+dfsg-11, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit de92d8c3f7727b729a02c931131bfbe94682d5a2
Author: Andreas Tille <tille@debian.org>
Date:   Sun Apr 3 08:35:17 2022 +0200

    Adapt to a change in Python3
Created: 2022-04-03 Last update: 2022-08-19 07:18
lintian reports 6 warnings normal
Lintian reports 6 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2021-10-13 Last update: 2022-07-30 12:14
AppStream hints: 1 warning normal
AppStream found metadata issues for packages:
  • khmer: 1 warning
You should get rid of them to provide more metadata about this software.
Created: 2021-02-27 Last update: 2021-02-27 09:00
Build log checks report 1 warning low
Build log checks report 1 warning
Created: 2021-01-05 Last update: 2021-01-05 03:55
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.6.1 instead of 4.6.0).
Created: 2022-05-11 Last update: 2022-05-11 23:24
testing migrations
  • excuses:
    • Migration status for khmer (- to 2.1.2+dfsg-10): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating khmer would introduce bugs in testing: #1008402
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/k/khmer.html
    • ∙ ∙ autopkgtest for khmer/2.1.2+dfsg-10: amd64: Pass, arm64: Pass, armel: Not a regression, armhf: Not a regression, i386: Not a regression, ppc64el: Not a regression, s390x: Not a regression
    • ∙ ∙ 259 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2022-04-26] khmer REMOVED from testing (Debian testing watch)
  • [2021-12-09] khmer 2.1.2+dfsg-10 MIGRATED to testing (Debian testing watch)
  • [2021-12-03] Accepted khmer 2.1.2+dfsg-10 (source) into unstable (Andreas Tille)
  • [2021-09-12] khmer 2.1.2+dfsg-9 MIGRATED to testing (Debian testing watch)
  • [2021-09-06] Accepted khmer 2.1.2+dfsg-9 (source) into unstable (Nilesh Patra)
  • [2021-01-09] khmer 2.1.2+dfsg-8 MIGRATED to testing (Debian testing watch)
  • [2021-01-04] Accepted khmer 2.1.2+dfsg-8 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-04-10] khmer 2.1.2+dfsg-7 MIGRATED to testing (Debian testing watch)
  • [2020-04-07] Accepted khmer 2.1.2+dfsg-7 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-12] khmer 2.1.2+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2019-01-09] Accepted khmer 2.1.2+dfsg-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-08] Accepted khmer 2.1.2+dfsg-5 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-07] Accepted khmer 2.1.2+dfsg-4 (source) into unstable (Andreas Tille)
  • [2018-03-22] khmer 2.1.2+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2018-02-11] Accepted khmer 2.1.2+dfsg-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2017-12-15] Accepted khmer 2.1.2+dfsg-2 (source) into unstable (Andreas Tille)
  • [2017-10-12] khmer 2.1.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2017-10-07] Accepted khmer 2.1.2+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2017-09-04] khmer 2.1.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2017-08-30] Accepted khmer 2.1.1+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2017-07-23] khmer REMOVED from testing (Debian testing watch)
  • [2017-04-12] khmer 2.0+dfsg-10 MIGRATED to testing (Debian testing watch)
  • [2017-04-06] Accepted khmer 2.0+dfsg-10 (source) into unstable (Mattia Rizzolo)
  • [2017-01-26] Accepted khmer 2.0+dfsg-9 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2017-01-15] Accepted khmer 2.0+dfsg-8 (source) into unstable (Sascha Steinbiss)
  • [2016-05-29] khmer 2.0+dfsg-7 MIGRATED to testing (Debian testing watch)
  • [2016-05-23] Accepted khmer 2.0+dfsg-7 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2016-05-10] khmer 2.0+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2016-05-04] Accepted khmer 2.0+dfsg-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2016-02-11] khmer 2.0+dfsg-5 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 1
  • I&N: 0
  • M&W: 0
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (0, 6)
  • buildd: logs, checks, clang, cross
  • popcon
  • browse source code
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  • debci

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