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lefse

determine features of organisms, clades, taxonomic units, genes

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general
  • source: lefse (main)
  • version: 1.1.2-3
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: any
  • std-ver: 4.7.4
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.0.8-3
  • oldstable: 1.1.2-1
  • stable: 1.1.2-2
  • testing: 1.1.2-2
  • unstable: 1.1.2-3
versioned links
  • 1.0.8-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.1.2-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.1.2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.1.2-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • lefse
action needed
Marked for autoremoval on 06 September due to h5py, httpcore, ipywidgets, python-jedi, towncrier: #1139604, #1143321, #1143428, #1144575, #1144659 high
Version 1.1.2-2 of lefse is marked for autoremoval from testing on Sun 06 Sep 2026. It depends (transitively) on h5py, httpcore, ipywidgets, python-jedi, towncrier, affected by #1139604, #1143321, #1143428, #1144575, #1144659. You should try to prevent the removal by fixing these RC bugs.
Created: 2026-08-13 Last update: 2026-08-25 04:52
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:01:04
    Last run: 2026-06-15T14:33:16.000Z
    Previous status: unknown

  • testing: fail (log)
    The tests ran in 0:00:18
    Last run: 2026-05-10T12:19:20.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:01:18
    Last run: 2026-07-15T18:34:16.000Z
    Previous status: unknown

Created: 2026-04-16 Last update: 2026-08-25 03:30
1 new commit since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit 1ddda907ab941529101495246db6aa759ea2faf9
Author: Nilesh Patra <nilesh@debian.org>
Date:   Sun Aug 23 23:33:15 2026 +0530

    d/t/control: Drop "any" from Architecture


https://salsa.debian.org/api/v4/projects/med-team%2Flefse API request failed: 401 Unauthorized at /srv/qa.debian.org/data/vcswatch/vcswatch line 410.
Created: 2026-08-23 Last update: 2026-08-23 19:32
debian/patches: 2 patches to forward upstream low

Among the 2 debian patches available in version 1.1.2-3 of the package, we noticed the following issues:

  • 2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2026-08-23 10:00
testing migrations
  • excuses:
    • Migration status for lefse (1.1.2-2 to 1.1.2-3): Waiting for test results or another package, or too young (no action required now - check later)
    • Issues preventing migration:
    • ∙ ∙ Autopkgtest for lefse/1.1.2-3: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, armhf: No tests, superficial or marked flaky ♻ (reference ♻), i386: No tests, superficial or marked flaky ♻ (reference ♻), loong64: Test triggered, ppc64el: No tests, superficial or marked flaky ♻, riscv64: Test triggered, s390x: Test triggered (will not be considered a regression) ♻ (reference ♻)
    • ∙ ∙ Too young, only 2 of 5 days old
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/l/lefse.html
    • ∙ ∙ Reproduced on amd64 - info
    • ∙ ∙ Reproduced on arm64 - info
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • Not considered
news
[rss feed]
  • [2026-08-22] Accepted lefse 1.1.2-3 (source) into unstable (Karsten Schöke) (signed by: Andreas Tille)
  • [2026-08-13] lefse 1.1.2-2 MIGRATED to testing (Debian testing watch)
  • [2026-05-09] lefse REMOVED from testing (Debian testing watch)
  • [2026-04-08] lefse 1.1.2-2 MIGRATED to testing (Debian testing watch)
  • [2026-03-23] lefse REMOVED from testing (Debian testing watch)
  • [2024-12-07] lefse 1.1.2-2 MIGRATED to testing (Debian testing watch)
  • [2024-12-04] Accepted lefse 1.1.2-2 (source) into unstable (Ananthu C V)
  • [2022-08-16] lefse 1.1.2-1 MIGRATED to testing (Debian testing watch)
  • [2022-08-12] lefse REMOVED from testing (Debian testing watch)
  • [2022-08-10] lefse 1.1.2-1 MIGRATED to testing (Debian testing watch)
  • [2022-08-09] lefse REMOVED from testing (Debian testing watch)
  • [2021-09-30] lefse 1.1.2-1 MIGRATED to testing (Debian testing watch)
  • [2021-09-28] Accepted lefse 1.1.2-1 (source) into unstable (Andreas Tille)
  • [2019-09-14] lefse 1.0.8-3 MIGRATED to testing (Debian testing watch)
  • [2019-09-11] Accepted lefse 1.0.8-3 (source) into unstable (Shayan Doust) (signed by: Andreas Tille)
  • [2018-08-29] lefse 1.0.8-2 MIGRATED to testing (Debian testing watch)
  • [2018-08-24] Accepted lefse 1.0.8-2 (source) into unstable (Andreas Tille)
  • [2017-06-20] lefse 1.0.8-1 MIGRATED to testing (Debian testing watch)
  • [2017-01-27] Accepted lefse 1.0.8-1 (source all) into unstable (Andreas Tille)
  • [2016-08-17] Accepted lefse 1.0+20160802-1~bpo8+1 (source all) into jessie-backports, jessie-backports (Andreas Tille)
  • [2016-08-14] lefse 1.0+20160802-1 MIGRATED to testing (Debian testing watch)
  • [2016-08-06] Accepted lefse 1.0+20160802-1 (source all) into unstable, unstable (Andreas Tille)
bugs [bug history graph]
  • all: 0
links
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  • browse source code
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  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.1.2-2build1

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