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commit fcdb6315cd7f139684b3b9cd9d510849df8ecb0b
Merge: 80c393b2 566fe763
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date: Mon Jan 31 16:07:50 2022 +0100
Update upstream source from tag 'upstream/0.8.48'
Update to upstream version '0.8.48'
with Debian dir 175f3edb4a97e3606fd0b6881ba6d5639573c33a
commit 80c393b2c4b8a320cb03908e469c48c4abe93bb9
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo@debian.org>
Date: Mon Jan 31 16:03:07 2022 +0100
Start preparing release 0.8.48-1 for Debian.
commit e6687f2d9a07b5d0354f2f018dcbb8c05262a91d
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Wed Jan 26 10:21:11 2022 +0100
libpappsomspp (0.8.47-1~bullseye+1) bullseye
commit de6e1f4847a1ea476a800edc300b6f1b54b51f00
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Jan 25 17:12:01 2022 +0100
PMSPP_LIB_DECL added, but operator<< is not implemented
commit 784ca6bab32abe09944d40f9bc431de20e9c2ce6
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Jan 25 14:32:44 2022 +0100
adapt msrun retention time API for MassChroQ traces
commit 0e0df1613a82583d84d924b58c406477a608a56c
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Jan 25 10:43:41 2022 +0100
new function to get common delta rt with a given reference
commit afd5ee3b515c82f5e7edbf117bc7c79798287eba
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon Jan 24 14:54:53 2022 +0100
libpappsomspp (0.8.46-1~bullseye+1) bullseye
commit 5d8137a3a7c355543b6f0e6ac913921c703ffa16
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon Jan 24 13:56:11 2022 +0100
also read XML from QString
commit ab2fce020406238308f0c2b7bee9b10f5b71fe51
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sun Jan 2 17:23:10 2022 +0100
libpappsomspp (0.8.45-1~bullseye+1) bullseye
commit fa57cf0dd7ea1bd530139ad5c03d734a7971774d
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 21:16:17 2021 +0100
write mz data format in xtandem result file from tandem wrapper
commit 25ad743706053d84e2b926c1a61b8cc425aa8de1
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 21:07:25 2021 +0100
more efficient multithreaded xic extraction
commit ead37385ceca10337f4d78c90d15e6540ecdb2b0
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 19:11:52 2021 +0100
remove unneeded debug info
commit f52ffe5628a1108e2359e32f7bc021cc7d2b07d0
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 17:54:43 2021 +0100
implement const iterators on filter suite string
commit d58c993fd3fc236e83e022b6c9c5e07d98c16884
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 16:11:42 2021 +0100
add sharde pointer typedef for filtersuitestring
commit d66b15181304d6f5acf47c036170bf79ad1a0e2c
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 15:41:14 2021 +0100
implement fitler name for quantile based removal filter
commit d1abdbaf6fb83bbda7fe9a958faa789019e241ff
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 25 15:22:13 2021 +0100
fix TDF filename and sample name
commit a9648c588567bd9f29a4c268b79cda9308fe6944
Merge: 0ce3208a a524319a
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 23 15:47:15 2021 +0100
Merge branch 'master' of forgemia.inra.fr:pappso/pappsomspp
commit 0ce3208a0560f1bf4dc525f221476184d4fe6539
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 23 15:47:04 2021 +0100
no error if error string is empty
commit a524319a85472b4e12c95b53a1faa72360b77702
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 21 13:19:45 2021 +0100
libpappsomspp (0.8.44-1~bullseye+1) bullseye
commit 1d7f785e61abdeeba852b03f43613e684f7acc91
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 21 13:02:37 2021 +0100
fix quantile filter for trace size==0
commit 73dfa8f69d4014ccb032fee92bf6bcaf429b70a0
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 21 08:52:08 2021 +0100
libpappsomspp (0.8.43-1~bullseye+1) bullseye
commit a78363f6154787f80d64bc7d25dc78c3c2dc8097
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon Dec 20 17:24:10 2021 +0100
test quantile function
commit 8dc0ee366d2fb1fbc4a923c6d5b934dba905d674
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 18 15:57:07 2021 +0100
test new filter to remove Y value based on quantile method
commit 767790cee0de09faa6785afd27fc89ee9cb14606
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 18 12:12:20 2021 +0100
WIP: coding a new quantile filter on data traces
commit a956da9df52a06034c0745e290e6c2a60c387b6c
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 18 10:08:54 2021 +0100
fix wrong API design to get complete ion name
commit e23e78acb9072bee9202a34656462b61097dd554
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 16 13:21:41 2021 +0100
libpappsomspp (0.8.42-1~bullseye+1) bullseye
commit 116e54ff5d243cc907a5e3e71d8a62ec29762a42
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Wed Dec 15 11:18:04 2021 +0100
peptide fragment tags
commit 5f6d890a76bb2fb5e61a2cda986be0a1e78987d1
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 14 18:48:26 2021 +0100
alignment API modified, better function name
commit 5d24d34df050bd65652ad5587c3f9188d6ce3338
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 14 16:31:48 2021 +0100
better API and new tests for alignment object
commit daf14cb02cf337a99ecc28a7ed32d8338efda5ee
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 14 09:08:45 2021 +0100
new function to compare text files
commit fd0aab18df5e04f39f17c95f0df17c630f5d22f0
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Tue Dec 14 08:56:02 2021 +0100
simplified retention time alignment routine
commit e8a5d89ecea1a0305a0cbc3c5fce49f13ae1d9c7
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon Dec 13 09:37:43 2021 +0100
test msrun alignment is back
commit 9bd3b5ef1c04f708675632fd423a1aad0923723f
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sun Dec 12 23:35:12 2021 +0100
test msrun alignment failure
commit 73aa7ece3ac7a1c62ee0b5fba9848b53cbb80f99
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sun Dec 12 17:11:52 2021 +0100
test msrun alignment failure
commit 7136494893cdd16bc054364676b4cf7674687c4d
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sun Dec 12 16:48:11 2021 +0100
restore lost data file
commit 9399b33d1be081c98bc9635a54632a1d9c50f195
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 11 14:40:44 2021 +0100
libpappsomspp (0.8.41-1~bullseye+1) bullseye
commit e97417bb34413a73f3c27efe565997b29e1c19d7
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sat Dec 11 08:00:39 2021 +0100
test data file path
commit a13df4c9fb12670abd300c378232472ff9c7d5c8
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 19:03:22 2021 +0100
fix yP and bP ion names
commit c33300b456e2df686bb6d7b07616070505ec8cfd
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 16:56:13 2021 +0100
new function to get complete ion name
commit 4bcc3fbb69e921a6b0c67821e674afa0563e6750
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 16:49:18 2021 +0100
new function to get complete ion name
commit fb693d5d27ec1409539ca33fb4a23b6d5fc08fd7
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 16:26:41 2021 +0100
write number of phospho neutral loss inside parenthesis
commit c32314e920269068d33c344bad84c385b7462cd1
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 16:09:32 2021 +0100
better ion type name QString
commit ccf5c690bb15cd00465b0d548b65e2717969b751
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 14:29:18 2021 +0100
display warnings in tests for xic extractor
commit bcc42a666e16dbdeccbdef45e2a45ff43e34b782
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 13:18:24 2021 +0100
WIP: parallelized xic extractor
commit eadd817184d33d6a873914599a8f7fad9f32581d
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri Dec 10 09:36:02 2021 +0100
WIP: trying to extract XIC in parallel threads
commit 3e74389d094ea8e323f7404c4fed4c91ab843e11
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 22:28:17 2021 +0100
WIP: trying to use mappedReduce qtconcurrent mecanism
commit b23dbaa3dbb0e9b77cd4ac1022214a095046cde7
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 16:47:21 2021 +0100
WIP: parralelized XIC extraction
commit 459974c13c1870cd788fe53bb4bc81cd0309bc78
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 16:36:41 2021 +0100
WIP: rework in xic extractor to prepare for parralelized XIC extraction
commit e6b438ab2cd9e3ddea2bfc1032e8f97c079beee1
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 15:06:30 2021 +0100
xic extractor protected interface modified to apply trace filters after XIC extraction
commit 90b453f2366cf26934ca68df0707147ef497ca97
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 14:03:30 2021 +0100
private post extraction process in xic extractor
commit 76ce5ac5f6fae837e2ea58c4c255818355df621f
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 14:02:45 2021 +0100
fix C12 abundance
commit 6e852496f471a8b29f7518f1aa4bc90ccc59807a
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu Dec 9 09:48:26 2021 +0100
bunch of bug fix in tandem run wrapper
commit 8301911dfd95ecb26447a6a260aa7d48885a58f0
Author: Olivier Langella <olivier.langella@u-psud.fr>
Date: Wed Dec 8 14:01:02 2021 +0100
new filter to remove intensity on all Y values
commit 856529fdf15f6ac182caaa901fcecb2982530db7
Author: Olivier Langella <olivierlangella@u-psud.fr>
Date: Fri Dec 3 19:58:15 2021 +0100
merge with buster branch fix
![[bug history graph]](https://qa.debian.org/data/bts/graphs/libp/libpappsomspp.png){kind=link}