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megadepth

computes coverage from BigWig and BAM sequencing files

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general
  • source: megadepth (main)
  • version: 1.2.0-5
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Steffen Moeller [DMD]
  • arch: any
  • std-ver: 4.7.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 1.2.0-4
  • stable: 1.2.0-4
  • testing: 1.2.0-4
  • unstable: 1.2.0-5
versioned links
  • 1.2.0-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.2.0-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • megadepth
action needed
Marked for autoremoval on 10 November due to libbigwig: #1113273, #1116426 high
Version 1.2.0-4 of megadepth is marked for autoremoval from testing on Mon 10 Nov 2025. It is affected by #1113273. The removal of megadepth will also cause the removal of (transitive) reverse dependency: r-bioc-megadepth. It depends (transitively) on libbigwig, affected by #1116426. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-09-26 Last update: 2025-10-27 21:00
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2025-10-25 Last update: 2025-10-27 22:01
debian/patches: 1 patch to forward upstream low

Among the 1 debian patch available in version 1.2.0-5 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-10-20 09:02
testing migrations
  • This package is part of the ongoing testing transition known as auto-libbigwig. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
  • excuses:
    • Migration status: Blocked. Can't migrate due to a non-migratable dependency. Check status below.
    • Blocked by: libbigwig
    • Migration status for megadepth (1.2.0-4 to 1.2.0-5): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
    • Issues preventing migration:
    • ∙ ∙ Depends: megadepth libbigwig (not considered)
    • ∙ ∙ Invalidated by dependency
    • Additional info:
    • ∙ ∙ Updating megadepth will fix bugs in testing: #1113273
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/m/megadepth.html
    • ∙ ∙ autopkgtest for megadepth/1.2.0-5: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Pass, s390x: No tests, superficial or marked flaky ♻
    • ∙ ∙ Reproducible on amd64 - info ♻
    • ∙ ∙ Reproducible on arm64 - info ♻
    • ∙ ∙ 8 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2025-10-19] Accepted megadepth 1.2.0-5 (source) into unstable (Andreas Tille)
  • [2022-08-12] megadepth 1.2.0-4 MIGRATED to testing (Debian testing watch)
  • [2022-08-06] Accepted megadepth 1.2.0-4 (source) into unstable (Mohammed Bilal) (signed by: Andreas Tille)
  • [2022-07-11] Accepted megadepth 1.2.0-3 (source) into unstable (Nilesh Patra)
  • [2022-04-16] megadepth 1.2.0-2 MIGRATED to testing (Debian testing watch)
  • [2022-04-11] Accepted megadepth 1.2.0-2 (source) into unstable (Andreas Tille)
  • [2022-04-09] Accepted megadepth 1.2.0-1 (source amd64) into unstable, unstable (Debian FTP Masters) (signed by: Andreas Tille)
bugs [bug history graph]
  • all: 0
links
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ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.2.0-4build2

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