mmseqs2 - Debian Package Tracker

general

source: mmseqs2 (main)
version: 15-6f452+ds-2
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Shayan Doust [DMD]
arch: all amd64 arm64 ia64 kfreebsd-amd64 mips64el ppc64el
std-ver: 4.6.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 12-113e3+ds-3
oldstable: 14-7e284+ds-1
stable: 15-6f452+ds-2
unstable: 15-6f452+ds-2

versioned links

12-113e3+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
14-7e284+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
15-6f452+ds-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

mmseqs2
mmseqs2-examples

action needed

A new upstream version is available: 18-8cc5c high

A new upstream version 18-8cc5c is available, you should consider packaging it.

Created: 2024-11-29 Last update: 2025-10-19 16:30

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 2-day delay is over. Check why.

Created: 2025-10-12 Last update: 2025-10-19 22:01

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 18-8cc5c+ds-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit b420bca43574c0b7337dbd70bbf73dffc711fcee
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:27:23 2025 +0200

    Refresh patches

commit 236e22919a388de69651bd1ce5fd996b84fe1574
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:11:05 2025 +0200

    debputy lint --auto-fix (routine-update)

commit bf8127c70dd280dba547c000964af4e37b3703f7
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:04:20 2025 +0200

    Standards-Version: 4.7.2 (routine-update)

commit 025caa42dc68766d880f84238f8f831638353a85
Merge: 24a7bbf 5717b94
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:04:20 2025 +0200

    Update upstream source from tag 'upstream/18-8cc5c+ds'
    
    Update to upstream version '18-8cc5c+ds'
    with Debian dir 216372b0ea944ec11b0aeb5569c485870c6710be

commit 24a7bbfcea66bf56a12fabe133dd981222d3bd7c
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:04:08 2025 +0200

    New upstream version

commit 5717b94c98c58af93a84e6fe6755431b0dc641c8
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:04:08 2025 +0200

    New upstream version 18-8cc5c+ds

commit 637108529248e405cc8a3f53a357c7f8e1fff130
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 21:03:19 2025 +0200

    d/watch: version=5

commit 1085e4accc9b84057a4e933870f6938eac7adef7
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 19 20:50:47 2025 +0200

    Fix build with CMake 4
      Closes: #1113291

commit 207f3e436197228330537294084277969bc72527
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 13:18:42 2024 +0100

    d/salsi-ci.yml: skip i386 build, add link to salsa-ci docs.

commit c533551996260d629207fe0fe789cdcb861f141b
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 08:47:22 2024 +0100

    d/control: simplify architecture specification by using the provisions from the architecture-properties package.

Created: 2024-03-07 Last update: 2025-10-19 21:00

lintian reports 5 warnings normal

Lintian reports 5 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2025-04-11 Last update: 2025-04-11 03:31

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).

Created: 2024-04-07 Last update: 2025-02-27 13:24

testing migrations

excuses:
- Migration status for mmseqs2 (- to 15-6f452+ds-2): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating mmseqs2 would introduce bugs in testing: #1113291
- Additional info:
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/m/mmseqs2.html
- ∙ ∙ autopkgtest for mmseqs2/15-6f452+ds-2: amd64: Pass, arm64: Pass, ppc64el: Pass, riscv64: Pass
- ∙ ∙ Reproducible on amd64 - info ♻
- ∙ ∙ Reproducible on arm64 - info ♻
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- ∙ ∙ 718 days old (needed 2 days)
- Not considered

news

[rss feed]

[2025-10-13] mmseqs2 REMOVED from testing (Debian testing watch)
[2023-11-04] mmseqs2 15-6f452+ds-2 MIGRATED to testing (Debian testing watch)
[2023-11-02] mmseqs2 15-6f452+ds-1 MIGRATED to testing (Debian testing watch)
[2023-11-01] Accepted mmseqs2 15-6f452+ds-2 (source) into unstable (Michael R. Crusoe)
[2023-10-31] Accepted mmseqs2 15-6f452+ds-1 (source) into unstable (Michael R. Crusoe)
[2023-08-01] mmseqs2 14-7e284+ds-2 MIGRATED to testing (Debian testing watch)
[2023-07-30] Accepted mmseqs2 14-7e284+ds-2 (source) into unstable (Bo YU) (signed by: Sascha Steinbiss)
[2023-01-22] Accepted mmseqs2 14-7e284+ds-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2022-11-29] mmseqs2 14-7e284+ds-1 MIGRATED to testing (Debian testing watch)
[2022-11-24] Accepted mmseqs2 14-7e284+ds-1 (source) into unstable (Andreas Tille)
[2021-10-17] mmseqs2 13-45111+ds-2 MIGRATED to testing (Debian testing watch)
[2021-10-12] Accepted mmseqs2 13-45111+ds-2 (source) into unstable (Andreas Tille)
[2021-09-15] mmseqs2 13-45111+ds-1 MIGRATED to testing (Debian testing watch)
[2021-07-03] Removed 12-113e3+ds-3~0exp0simde from experimental (Debian FTP Masters)
[2021-03-10] Accepted mmseqs2 13-45111+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2021-02-23] mmseqs2 12-113e3+ds-3 MIGRATED to testing (Debian testing watch)
[2021-02-12] Accepted mmseqs2 12-113e3+ds-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-12-23] Accepted mmseqs2 12-113e3+ds-3~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-11-21] mmseqs2 12-113e3+ds-2 MIGRATED to testing (Debian testing watch)
[2020-11-15] Accepted mmseqs2 12-113e3+ds-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-10-11] mmseqs2 12-113e3+ds-1 MIGRATED to testing (Debian testing watch)
[2020-09-02] Accepted mmseqs2 12-113e3+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-09-02] mmseqs2 11-e1a1c+ds-4 MIGRATED to testing (Debian testing watch)
[2020-08-31] Accepted mmseqs2 11-e1a1c+ds-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-05-07] mmseqs2 11-e1a1c+ds-3 MIGRATED to testing (Debian testing watch)
[2020-05-04] Accepted mmseqs2 11-e1a1c+ds-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-04-27] mmseqs2 11-e1a1c+ds-2 MIGRATED to testing (Debian testing watch)
[2020-04-24] Accepted mmseqs2 11-e1a1c+ds-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-04-23] Accepted mmseqs2 11-e1a1c+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-02-17] mmseqs2 10-6d92c+ds-2 MIGRATED to testing (Debian testing watch)

bugs [bug history graph]

all: 1
RC: 0
I&N: 0
M&W: 0
F&P: 1
patch: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 15-6f452+ds-2