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phyml

Phylogenetic estimation using Maximum Likelihood

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general
  • source: phyml (main)
  • version: 3:3.3.20250515-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Kevin Murray [DMD] – Étienne Mollier [DMD]
  • arch: any
  • std-ver: 4.7.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 3:3.3.20200621-1
  • oldstable: 3:3.3.20220408-3
  • stable: 3:3.3.20220408-4
  • testing: 3:3.3.20220408-4
  • unstable: 3:3.3.20250515-1
versioned links
  • 3:3.3.20200621-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3:3.3.20220408-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3:3.3.20220408-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3:3.3.20250515-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • phyml
action needed
lintian reports 3 warnings high
Lintian reports 3 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2024-03-01 Last update: 2025-12-07 11:30
debian/patches: 1 patch with invalid metadata, 6 patches to forward upstream high

Among the 9 debian patches available in version 3:3.3.20250515-1 of the package, we noticed the following issues:

  • 1 patch with invalid metadata that ought to be fixed.
  • 6 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-12-07 07:31
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 3:3.3.20250515-2, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 31554a02a5e7ccd2efc9502d9048cf6fbbbc1552
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 23:38:36 2025 +0100

    No build on i386 in Salsa CI

commit 7b383dbfd16bc17e8d66763dd832c54d91787417
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 23:13:37 2025 +0100

    d/copyright: Remove old FSF address

commit 5bd16a97ef4074287cc6dd1cf82fcb7e27d7027d
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 23:11:26 2025 +0100

    Upload to unstable

commit 893b7a76eeea04be798bde8d7f9865f4ea5a203f
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 23:06:39 2025 +0100

    Work around broken clean target

commit 4773ab9bd06e3a410bcef365d139dd5c1be233c1
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 22:30:14 2025 +0100

    Refresh patches

commit 887f13251b5abb054eb011ee38357226c5c34d6d
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:15:31 2025 +0100

    Standards-Version: 4.7.2 (routine-update)

commit f089d8975fe342e96450c002deab24eb39204d25
Merge: 8ff80e1 a841b84
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:15:30 2025 +0100

    Update upstream source from tag 'upstream/3.3.20250515'
    
    Update to upstream version '3.3.20250515'
    with Debian dir e4989ce0aad48d13ffce2ef86db9741d3f270936

commit 8ff80e156cf65c600786f7d87a06c99ef46e2b43
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:15:25 2025 +0100

    New upstream version

commit a841b84fc6615b84ca82c85eaab9a7fd150decc1
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:15:25 2025 +0100

    New upstream version 3.3.20250515

commit 7e5cf91a5d27cb05e0e482e211f2214e6895067d
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:15:01 2025 +0100

    d/watch: version=5

commit 62211745151a29d5ab766cc9f89fad7b9f706826
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 21:12:39 2025 +0100

    Restrict to 64 bit architectures only by Build-Depending architecture-is-64-bit Closes: #1106652
Created: 2025-12-07 Last update: 2025-12-07 03:00
testing migrations
  • excuses:
    • Migration status for phyml (3:3.3.20220408-4 to 3:3.3.20250515-1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ phyml unsatisfiable Build-Depends(-Arch) on armhf: architecture-is-64-bit
    • ∙ ∙ phyml unsatisfiable Build-Depends(-Arch) on i386: architecture-is-64-bit
    • ∙ ∙ Missing build on arm64
    • ∙ ∙ Missing build on armhf
    • ∙ ∙ Missing build on i386
    • ∙ ∙ Missing build on riscv64
    • ∙ ∙ Autopkgtest deferred on arm64: missing arch:arm64 build
    • ∙ ∙ Autopkgtest deferred on i386: missing arch:i386 build
    • ∙ ∙ Autopkgtest deferred on riscv64: missing arch:riscv64 build
    • ∙ ∙ Autopkgtest for phyml/3:3.3.20250515-1: amd64: Pass, ppc64el: Test triggered, s390x: Test triggered
    • ∙ ∙ Autopkgtest for prottest/3.4.2+dfsg-8: amd64: Pass, ppc64el: Test triggered, s390x: Test triggered
    • ∙ ∙ Lintian check waiting for test results on arm64, armhf, riscv64, i386 - info
    • ∙ ∙ Too young, only 1 of 5 days old
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/p/phyml.html
    • ∙ ∙ Reproducible on amd64 - info ♻
    • Not considered
news
[rss feed]
  • [2025-12-06] Accepted phyml 3:3.3.20250515-1 (source) into unstable (Andreas Tille)
  • [2024-12-05] phyml 3:3.3.20220408-4 MIGRATED to testing (Debian testing watch)
  • [2024-11-09] Accepted phyml 3:3.3.20220408-4 (source) into unstable (Étienne Mollier)
  • [2022-11-01] phyml 3:3.3.20220408-3 MIGRATED to testing (Debian testing watch)
  • [2022-10-26] Accepted phyml 3:3.3.20220408-3 (source) into unstable (Étienne Mollier)
  • [2022-08-18] phyml 3:3.3.20220408-2 MIGRATED to testing (Debian testing watch)
  • [2022-08-12] Accepted phyml 3:3.3.20220408-2 (source) into unstable (Nilesh Patra)
  • [2022-05-11] phyml 3:3.3.20220408-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-08] Accepted phyml 3:3.3.20220408-1 (source) into unstable (Étienne Mollier)
  • [2022-02-14] phyml 3:3.3.20211231-1 MIGRATED to testing (Debian testing watch)
  • [2022-02-11] Accepted phyml 3:3.3.20211231-1 (source) into unstable (Étienne Mollier)
  • [2021-11-21] phyml 3:3.3.20211021-1 MIGRATED to testing (Debian testing watch)
  • [2021-11-19] Accepted phyml 3:3.3.20211021-1 (source) into unstable (Étienne Mollier)
  • [2021-11-07] phyml 3:3.3.20200621-3 MIGRATED to testing (Debian testing watch)
  • [2021-11-04] Accepted phyml 3:3.3.20200621-3 (source) into unstable (Étienne Mollier)
  • [2021-10-09] phyml 3:3.3.20200621-2 MIGRATED to testing (Debian testing watch)
  • [2021-10-06] Accepted phyml 3:3.3.20200621-2 (source) into unstable (Andreas Tille)
  • [2020-07-26] phyml 3:3.3.20200621-1 MIGRATED to testing (Debian testing watch)
  • [2020-07-22] Accepted phyml 3:3.3.20200621-1 (source) into unstable (Shayan Doust) (signed by: Andreas Tille)
  • [2019-11-09] phyml 3:3.3.20190909-1 MIGRATED to testing (Debian testing watch)
  • [2019-11-06] Accepted phyml 3:3.3.20190909-1 (source) into unstable (Steffen Moeller)
  • [2019-08-27] phyml 3:3.3.20190321-2 MIGRATED to testing (Debian testing watch)
  • [2019-08-24] Accepted phyml 3:3.3.20190321-2 (source) into unstable (Andreas Tille)
  • [2019-08-01] Accepted phyml 3:3.3.20190321-1 (source) into unstable (Andreas Tille)
  • [2018-06-30] phyml 3:3.3.20180621-2 MIGRATED to testing (Debian testing watch)
  • [2018-06-27] Accepted phyml 3:3.3.20180621-2 (source) into unstable (Graham Inggs)
  • [2018-06-26] Accepted phyml 3:3.3.20180621-1 (source) into unstable (Andreas Tille)
  • [2018-05-02] phyml 3:3.3.20180214+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2018-04-27] Accepted phyml 3:3.3.20180214+dfsg-1 (source) into unstable (Andreas Tille)
  • [2017-07-05] phyml 3:3.3.20170530+dfsg-2 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
links
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  • version: 3:3.3.20220408-4build1

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