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picard-tools

Command line tools to manipulate SAM and BAM files

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general
  • source: picard-tools (main)
  • version: 3.4.0+dfsg-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Vincent Danjean [DMD] – Steffen Moeller [DMD] – Olivier Sallou [DMD] – Pierre Gruet [DMD]
  • arch: all
  • std-ver: 4.7.3
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.24.1+dfsg-1
  • oldstable: 2.27.5+dfsg-2
  • stable: 3.3.0+dfsg-2
  • testing: 3.4.0+dfsg-1
  • unstable: 3.4.0+dfsg-1
versioned links
  • 2.24.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.27.5+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.3.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.4.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • libpicard-java
  • libpicard-java-doc
  • picard-tools
action needed
Marked for autoremoval on 01 August: #1139484 high
Version 3.4.0+dfsg-1 of picard-tools is marked for autoremoval from testing on Sat 01 Aug 2026. It is affected by #1139484. The removal of picard-tools will also cause the removal of (transitive) reverse dependencies: artemis, drop-seq, libgoby-java, paleomix. You should try to prevent the removal by fixing these RC bugs.
Created: 2026-06-16 Last update: 2026-07-07 09:30
Fails to build during reproducibility testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2026-06-05 Last update: 2026-07-07 04:31
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 3.4.0+dfsg-2, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit d9a512d43ea9ad97fa8163a74dc9f94761d85775
Author: Andreas Tille <tille@debian.org>
Date:   Tue Jun 30 14:06:02 2026 +0200

    Build-Depends: s/default-jdk/default-jdk-headless/

commit 5fb574e6fc7fdcb0ebf2db583e7f75617753ea58
Author: Andreas Tille <tille@debian.org>
Date:   Tue Jun 30 14:04:10 2026 +0200

    Remove myself from Uploaders
Created: 2026-06-30 Last update: 2026-06-30 15:01
lintian reports 1 warning normal
Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.
Created: 2026-02-16 Last update: 2026-02-16 19:30
debian/patches: 3 patches to forward upstream low

Among the 13 debian patches available in version 3.4.0+dfsg-1 of the package, we noticed the following issues:

  • 3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-12-26 19:30
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.3).
Created: 2026-03-31 Last update: 2026-03-31 15:01
news
[rss feed]
  • [2025-12-28] picard-tools 3.4.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2025-12-26] Accepted picard-tools 3.4.0+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2025-02-06] picard-tools 3.3.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-02-05] picard-tools REMOVED from testing (Debian testing watch)
  • [2025-01-03] picard-tools 3.3.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2024-12-28] Accepted picard-tools 3.3.0+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2024-12-26] Accepted picard-tools 3.3.0+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2023-12-24] picard-tools 3.1.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-12-16] Accepted picard-tools 3.1.1+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2023-07-11] picard-tools 3.0.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-07-05] Accepted picard-tools 3.0.0+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-11-09] picard-tools 2.27.5+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2022-11-06] Accepted picard-tools 2.27.5+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2022-11-04] Accepted picard-tools 2.27.5+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-09-25] picard-tools 2.27.4+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-09-22] Accepted picard-tools 2.27.4+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-07-12] picard-tools 2.27.2+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2022-07-07] Accepted picard-tools 2.27.2+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2022-06-30] picard-tools 2.27.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-06-26] Accepted picard-tools 2.27.2+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-04-26] picard-tools 2.27.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-04-24] Accepted picard-tools 2.27.1+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-02-21] picard-tools 2.26.10+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-02-18] Accepted picard-tools 2.26.10+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2021-12-10] picard-tools 2.26.6+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2021-12-04] Accepted picard-tools 2.26.6+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2021-12-02] Accepted picard-tools 2.26.6+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2021-01-30] picard-tools 2.24.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-28] Accepted picard-tools 2.24.1+dfsg-1 (source) into unstable (Andreas Tille)
  • [2020-11-23] picard-tools 2.23.8+dfsg-3 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 1
  • I&N: 0
  • M&W: 0
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (0, 1)
  • buildd: logs, reproducibility
  • popcon
  • browse source code
  • other distros
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 3.4.0+dfsg-1

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