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pyensembl

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general
  • source: pyensembl (main)
  • version: 2.3.13-2
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Étienne Mollier [DMD] – Steffen Moeller [DMD]
  • arch: all
  • std-ver: 4.7.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 2.2.4+ds-1
  • stable: 2.3.13-2
  • testing: 2.3.13-2
  • unstable: 2.3.13-2
versioned links
  • 2.2.4+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.3.13-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • pyensembl
action needed
Marked for autoremoval on 05 October due to csh, emboss, mafft: #1096486, #1096578, #1097352 high
Version 2.3.13-2 of pyensembl is marked for autoremoval from testing on Sun 05 Oct 2025. It depends (transitively) on csh, emboss, mafft, affected by #1096486, #1096578, #1097352. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-08-18 Last update: 2025-09-07 07:03
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 2.3.13-3, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 403939bc9e479d171253ced8b5eccba3cafc3cea
Author: Steffen Möller <moeller@debian.org>
Date:   Fri Aug 1 18:44:42 2025 +0100

    tinytimer - missed while executing command line
    
    $ pyensembl install --release 111 --species homo_sapiens
    Traceback (most recent call last):
      File "/usr/bin/pyensembl", line 33, in <module>
        sys.exit(load_entry_point('pyensembl==2.3.13', 'console_scripts', 'pyensembl')())
                 ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/usr/bin/pyensembl", line 25, in importlib_load_entry_point
        return next(matches).load()
               ~~~~~~~~~~~~~~~~~~^^
      File "/usr/lib/python3.13/importlib/metadata/__init__.py", line 179, in load
        module = import_module(match.group('module'))
      File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module
        return _bootstrap._gcd_import(name[level:], package, level)
               ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
      File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
      File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
      File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
      File "/usr/lib/python3/dist-packages/pyensembl/shell.py", line 43, in <module>
        import pkg_resources
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3661, in <module>
        @_call_aside
         ^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3645, in _call_aside
        f(*args, **kwargs)
        ~^^^^^^^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3674, in _initialize_master_working_set
        working_set = _declare_state('object', 'working_set', WorkingSet._build_master())
                                                              ~~~~~~~~~~~~~~~~~~~~~~~~^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 654, in _build_master
        ws.require(__requires__)
        ~~~~~~~~~~^^^^^^^^^^^^^^
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1066, in require
        needed = self.resolve(parse_requirements(requirements))
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 893, in resolve
        dist = self._resolve_dist(
            req, best, replace_conflicting, env, installer, required_by, to_activate
        )
      File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 934, in _resolve_dist
        raise DistributionNotFound(req, requirers)
    pkg_resource.DistributionNotFound: The 'tinytimer<1.0.0,>=0.0.0' distribution was not found and is required by pyensembl
Created: 2025-08-01 Last update: 2025-08-30 22:36
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.7.0).
Created: 2025-02-21 Last update: 2025-02-27 13:25
news
[rss feed]
  • [2025-02-19] pyensembl 2.3.13-2 MIGRATED to testing (Debian testing watch)
  • [2025-02-16] Accepted pyensembl 2.3.13-2 (source) into unstable (Alexandre Detiste)
  • [2024-05-14] pyensembl 2.3.13-1 MIGRATED to testing (Debian testing watch)
  • [2024-05-11] Accepted pyensembl 2.3.13-1 (source) into unstable (Alexandre Detiste)
  • [2024-04-26] pyensembl 2.3.12-1 MIGRATED to testing (Debian testing watch)
  • [2024-04-24] Accepted pyensembl 2.3.12-1 (source) into unstable (Étienne Mollier)
  • [2024-04-02] pyensembl 2.3.11-1 MIGRATED to testing (Debian testing watch)
  • [2024-03-10] Accepted pyensembl 2.3.11-1 (source) into unstable (Étienne Mollier)
  • [2024-03-02] pyensembl 2.3.9-2 MIGRATED to testing (Debian testing watch)
  • [2024-02-28] Accepted pyensembl 2.3.9-2 (source) into unstable (Étienne Mollier)
  • [2024-02-28] Accepted pyensembl 2.3.9-1 (source) into unstable (Étienne Mollier)
  • [2024-01-07] pyensembl 2.2.9+ds-1 MIGRATED to testing (Debian testing watch)
  • [2024-01-04] Accepted pyensembl 2.2.9+ds-1 (source) into unstable (Lance Lin)
  • [2023-08-07] pyensembl 2.2.8+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-08-02] Accepted pyensembl 2.2.8+ds-1 (source) into unstable (Lance Lin) (signed by: Andreas Tille)
  • [2022-12-31] pyensembl 2.2.4+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-12-25] Accepted pyensembl 2.2.4+ds-1 (source) into unstable (Andreas Tille)
  • [2022-11-10] pyensembl 2.1.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-11-04] Accepted pyensembl 2.1.0+ds-1 (source) into unstable (Lance Lin) (signed by: Andreas Tille)
  • [2022-09-06] pyensembl 2.0.1+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-09-04] Accepted pyensembl 2.0.1+ds-1 (source) into unstable (Étienne Mollier)
  • [2022-07-26] pyensembl 2.0.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-07-23] pyensembl REMOVED from testing (Debian testing watch)
  • [2022-05-08] pyensembl 2.0.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-02] Accepted pyensembl 2.0.0+ds-1 (source) into unstable (Étienne Mollier)
  • [2021-10-17] pyensembl 1.9.4+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-10-11] Accepted pyensembl 1.9.4+ds-1 (source) into unstable (Andreas Tille)
  • [2021-10-11] Accepted pyensembl 1.9.1+ds-1 (source all) into unstable, unstable (Debian FTP Masters) (signed by: Nilesh Patra)
bugs [bug history graph]
  • all: 0
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  • version: 2.3.13-2

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