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general
  • source: python-biopython (main)
  • version: 1.86+dfsg-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Étienne Mollier [DMD]
  • arch: all any
  • std-ver: 4.7.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.78+dfsg-4
  • oldstable: 1.80+dfsg-4
  • stable: 1.85+dfsg-4
  • testing: 1.86+dfsg-1
  • unstable: 1.86+dfsg-1
versioned links
  • 1.78+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.80+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.85+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.86+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • python-biopython-doc
  • python3-biopython
  • python3-biopython-sql
action needed
Marked for autoremoval on 29 January due to ncbi-tools6, osmnx, python-tenacity: #1123321, #1123424, #1123553 high
Version 1.86+dfsg-1 of python-biopython is marked for autoremoval from testing on Thu 29 Jan 2026. It depends (transitively) on ncbi-tools6, osmnx, python-tenacity, affected by #1123321, #1123424, #1123553. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-12-23 Last update: 2025-12-25 06:01
1 security issue in sid high

There is 1 open security issue in sid.

1 important issue:
  • CVE-2025-68463: Bio.Entrez in Biopython through 186 allows doctype XXE.
Created: 2025-12-18 Last update: 2025-12-19 20:00
1 security issue in forky high

There is 1 open security issue in forky.

1 important issue:
  • CVE-2025-68463: Bio.Entrez in Biopython through 186 allows doctype XXE.
Created: 2025-12-18 Last update: 2025-12-19 20:00
Does not build reproducibly during testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2025-11-01 Last update: 2025-12-25 04:33
Depends on packages which need a new maintainer normal
The packages that python-biopython depends on which need a new maintainer are:
  • w3c-sgml-lib (#739087)
    • Depends: w3c-sgml-lib
Created: 2022-03-06 Last update: 2025-12-25 04:32
1 low-priority security issue in trixie low

There is 1 open security issue in trixie.

1 issue left for the package maintainer to handle:
  • CVE-2025-68463: (needs triaging) Bio.Entrez in Biopython through 186 allows doctype XXE.

You can find information about how to handle this issue in the security team's documentation.

Created: 2025-12-18 Last update: 2025-12-19 20:00
1 low-priority security issue in bookworm low

There is 1 open security issue in bookworm.

1 issue left for the package maintainer to handle:
  • CVE-2025-68463: (needs triaging) Bio.Entrez in Biopython through 186 allows doctype XXE.

You can find information about how to handle this issue in the security team's documentation.

Created: 2025-12-18 Last update: 2025-12-19 20:00
debian/patches: 1 patch to forward upstream low

Among the 4 debian patches available in version 1.86+dfsg-1 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2024-09-14 Last update: 2025-10-30 09:30
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.3 instead of 4.7.2).
Created: 2025-12-23 Last update: 2025-12-23 20:00
news
[rss feed]
  • [2025-11-01] python-biopython 1.86+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2025-10-29] Accepted python-biopython 1.86+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2025-09-16] python-biopython 1.85+dfsg-5 MIGRATED to testing (Debian testing watch)
  • [2025-09-14] Accepted python-biopython 1.85+dfsg-5 (source) into unstable (Étienne Mollier)
  • [2025-04-15] python-biopython 1.85+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2025-04-11] Accepted python-biopython 1.85+dfsg-4 (source) into unstable (Santiago Vila)
  • [2025-04-11] Accepted python-biopython 1.85+dfsg-3 (source) into unstable (Santiago Vila)
  • [2025-02-13] python-biopython 1.85+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-02-06] Accepted python-biopython 1.85+dfsg-2 (source) into unstable (Michael R. Crusoe)
  • [2025-01-29] Accepted python-biopython 1.85+dfsg-1 (source) into unstable (Michael R. Crusoe)
  • [2024-11-02] python-biopython 1.84+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-10-31] Accepted python-biopython 1.84+dfsg-4 (source) into unstable (Étienne Mollier)
  • [2024-10-20] python-biopython 1.84+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2024-10-18] Accepted python-biopython 1.84+dfsg-3 (source) into unstable (Étienne Mollier)
  • [2024-09-25] Accepted python-biopython 1.84+dfsg-2 (source) into unstable (Étienne Mollier)
  • [2024-09-23] Accepted python-biopython 1.84+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2024-09-20] python-biopython 1.83+dfsg1-5 MIGRATED to testing (Debian testing watch)
  • [2024-09-16] Accepted python-biopython 1.84+dfsg-1~0exp1 (source) into experimental (Étienne Mollier)
  • [2024-09-14] Accepted python-biopython 1.83+dfsg1-5 (source) into unstable (Michael R. Crusoe)
  • [2024-09-08] python-biopython 1.83+dfsg1-4 MIGRATED to testing (Debian testing watch)
  • [2024-09-06] Accepted python-biopython 1.83+dfsg1-4 (source) into unstable (Étienne Mollier)
  • [2024-05-25] python-biopython 1.83+dfsg1-3 MIGRATED to testing (Debian testing watch)
  • [2024-05-22] Accepted python-biopython 1.83+dfsg1-3 (source) into unstable (Étienne Mollier)
  • [2024-05-03] python-biopython 1.83+dfsg1-2 MIGRATED to testing (Debian testing watch)
  • [2024-04-17] Accepted python-biopython 1.83+dfsg1-2 (source) into unstable (Andrius Merkys)
  • [2024-03-21] Accepted python-biopython 1.83+dfsg1-1 (source) into unstable (Étienne Mollier)
  • [2024-03-10] Accepted python-biopython 1.83+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2023-12-24] python-biopython 1.81+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2023-12-19] Accepted python-biopython 1.81+dfsg-3 (source) into unstable (Étienne Mollier)
  • [2023-11-14] python-biopython 1.81+dfsg-2 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 0
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
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  • version: 1.86+dfsg-1

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