relion - Debian Package Tracker

general

source: relion (main)
version: 3.1.3-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Roland Fehrenbacher [DMD]
arch: any
std-ver: 4.7.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 3.1.0-4
oldstable: 3.1.3-3
stable: 3.1.3-4
unstable: 3.1.3-4

versioned links

3.1.0-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
3.1.3-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
3.1.3-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

relion
relion-gui

action needed

A new upstream version is available: 5.1.0 high

A new upstream version 5.1.0 is available, you should consider packaging it.

Created: 2025-11-27 Last update: 2026-03-23 00:32

lintian reports 290 errors high

Lintian reports 290 errors about this package. You should make the package lintian clean getting rid of them.

Created: 2024-11-03 Last update: 2025-11-03 23:17

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2026-01-22 Last update: 2026-03-23 06:33

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 5.0.1-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit bd62d44268a9c3f492b76cf76e8dd81d09057fd9
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 17:54:25 2026 +0100

    Updating changelog

commit 93e376a4bee0db36081de872c3be3bf76a163cd5
Merge: ad6f088 e7061c7
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 17:01:58 2026 +0100

    Update upstream source from tag 'upstream/5.0.1+dfsg'
    
    Update to upstream version '5.0.1+dfsg'
    with Debian dir bbf0ddc1d30df9b11ed486d8a22722df11e5179d

commit e7061c724dea9628dbcfb9a747257a680effe900
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 17:01:41 2026 +0100

    New upstream version 5.0.1+dfsg

commit ad6f08816c9f89849e400f3b4f9b8413337eb2e2
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 17:01:28 2026 +0100

    Repacking without embedded copy of Eigen

commit c38bbeae796a1594eba33696878299fe6adf09ab
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 16:43:11 2026 +0100

    Adding TODO about removing Eigen from package

commit 64d61a885a5d1e2316bec74123845a9f97798dbf
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 16:40:12 2026 +0100

    Updating changelog

commit 148e7d23b397c55fb712fa445ca025004ce30ad4
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 16:39:17 2026 +0100

    Raising Standards version to 4.7.3

commit 41919987c7e5bdea5a8df042589211a4f8f37091
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 16:39:09 2026 +0100

    Removing Priority: optional, which is default

commit 6a558fe5e11806e2cb0ba7330de711294e77b70a
Author: Pierre Gruet <pgt@debian.org>
Date:   Sun Feb 22 16:35:25 2026 +0100

    B-D on libtorch-dev

commit 141fba11f0f219b463f4b5dc7a3c545bf39f375a
Author: Yavor Doganov <yavor@gnu.org>
Date:   Wed Nov 5 09:21:00 2025 +0200

    Refresh changelog to trigger Salsa CI.

commit 2e5caa55272215b2d586454445ec8f5ee58949f4
Author: Yavor Doganov <yavor@gnu.org>
Date:   Wed Nov 5 09:19:04 2025 +0200

    salsa-ci.yml: Use the default recipe.

commit a6c60f185f1f070067c8f258b7566f8b79b1fa8d
Author: Yavor Doganov <yavor@gnu.org>
Date:   Wed Nov 5 09:00:47 2025 +0200

    Delete Python/Bash scripts which will fail due to missing modules.

commit e0888e56cb19ec3b0332d04ad499085ce17f9543
Author: Yavor Doganov <yavor@gnu.org>
Date:   Wed Nov 5 08:37:30 2025 +0200

    Use the system Eigen library instead of the bundled copy.

commit b50cf4a754b011e61f42b7245a45c58a9eaa6e23
Author: Yavor Doganov <yavor@gnu.org>
Date:   Wed Nov 5 08:08:47 2025 +0200

    copyright: Update years, fix superfluous patterns, add EPL and MPL-2.

commit 9aee694aa16c78e2613547a348740408e7db06dd
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 19:04:15 2025 +0200

    (Depends): Add ctffind (<< 5).

commit de877310e5a4b8bfad468d4d60927aafe8bf5e13
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 19:01:47 2025 +0200

    (Recommends): Add ghostscript, pbzip2, xz-utils and zstd.

commit 04f3b37775e23df2577c35e2ab7ba4c5303e7cb8
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 18:41:25 2025 +0200

    watch: Upgrade to version 5.

commit c4e23b42e9fca831401fb4364543b76e5d3a3f1d
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 18:36:14 2025 +0200

    (Standards-Version): Claim compliance with 4.7.2; no changes needed.

commit 7fe3445cb7732e7d02d2fd92bf838924ccee1c85
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 18:35:40 2025 +0200

    (Rules-Requires-Root): Remove; it's the default.

commit fba7c263dd8b37db8493260030d4d7b76a35c1b3
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 18:35:09 2025 +0200

    (Breaks, Replaces): Remove; obsolete.

commit 0db2f17d8e16e5e20188a4bf398c876ba505354e
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 18:32:29 2025 +0200

    Python-related fixes so that relion_it/relion_schemegui work.

commit 38edb3853164821a3bac125cb764d08109d8f279
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 16:32:30 2025 +0200

    rules: Fix FTBFS with CMake 4 (#1113466).

commit 56f7ff73afd94947afbb17ed68e0ec8eb38ed1d7
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 16:15:42 2025 +0200

    rules: Simplify; use standard dh_* commands where possible.

commit e509ba62841159662e582b038bdd8409ecc5cb2d
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 15:38:08 2025 +0200

    rules: Enable full hardening.

commit a874da796f413b5f0dffe02c2bde5b35536bed4f
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 15:31:27 2025 +0200

    (Build-Depends): Remove fluid (unnecessary); add libpng-dev.

commit ed30ac73076c87cc7b0766520c2d8f4edead0c33
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 15:29:47 2025 +0200

    Run wrap-and-sort -ast.

commit 7c28f97299c1716526299e49432744e0a7cb1406
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 15:26:47 2025 +0200

    format-security.patch: New; fix FTBFS with -Werror=format-security.

commit bea70bb703a529c0955d602900e1586c9790ce13
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 15:24:00 2025 +0200

    typos.patch: Remove hunks applied upstream; fix more spelling errors.

commit 5512eecb8ddfd3170ae9efedfdb7a79862b18c67
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 14:10:57 2025 +0200

    0001-Repair-wrong-comment-sign-pointed-out-by-Alexey-Roma.patch: Delete.

commit 056457ae65fb378cdcbcd7e90e69cc608dc0c49e
Merge: 4485256 d983f8a
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 14:04:33 2025 +0200

    Update upstream source from tag 'upstream/5.0.1'
    
    Update to upstream version '5.0.1'
    with Debian dir 796f5edf1d5fe6d7edc2cc2ea484c7dbf0e51b43

commit d983f8a301a6ac2e013333fc1eeebf74db361b95
Author: Yavor Doganov <yavor@gnu.org>
Date:   Tue Nov 4 14:04:17 2025 +0200

    New upstream version 5.0.1

Created: 2025-11-05 Last update: 2026-03-16 16:00

debian/patches: 2 patches to forward upstream low

Among the 2 debian patches available in version 3.1.3-4 of the package, we noticed the following issues:

2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2024-11-10 12:00

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.3 instead of 4.7.0).

Created: 2025-02-21 Last update: 2025-12-23 20:00

testing migrations

excuses:
- Migration status for relion (- to 3.1.3-4): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating relion would introduce bugs in testing: #1097784, #1113466
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/relion.html
- ∙ ∙ Autopkgtest for relion/3.1.3-4: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, i386: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: No tests, superficial or marked flaky ♻, s390x: No tests, superficial or marked flaky ♻
- ∙ ∙ Reproduced on amd64
- ∙ ∙ Reproduced on arm64
- ∙ ∙ Reproduced on armhf
- ∙ ∙ Reproduced on i386
- ∙ ∙ Reproduced on ppc64el
- ∙ ∙ 498 days old (needed 5 days)
- Not considered

news

[rss feed]

[2025-09-21] relion REMOVED from testing (Debian testing watch)
[2024-12-05] relion 3.1.3-4 MIGRATED to testing (Debian testing watch)
[2024-11-09] Accepted relion 3.1.3-4 (source) into unstable (Étienne Mollier)
[2022-12-11] relion 3.1.3-3 MIGRATED to testing (Debian testing watch)
[2022-12-06] Accepted relion 3.1.3-3 (source) into unstable (Andreas Tille)
[2022-10-04] relion 3.1.3-2 MIGRATED to testing (Debian testing watch)
[2022-09-29] Accepted relion 3.1.3-2 (source) into unstable (Andreas Beckmann)
[2021-10-24] relion 3.1.3-1 MIGRATED to testing (Debian testing watch)
[2021-10-19] Accepted relion 3.1.3-1 (source) into unstable (Andreas Tille)
[2020-12-02] relion 3.1.0-4 MIGRATED to testing (Debian testing watch)
[2020-12-02] relion 3.1.0-4 MIGRATED to testing (Debian testing watch)
[2020-10-07] Accepted relion 3.1.0-4 (source) into unstable (Andreas Tille)
[2020-10-07] Accepted relion 3.1.0-3 (source amd64) into unstable, unstable (Debian FTP Masters) (signed by: Roland Fehrenbacher)
[2020-10-07] Accepted relion 3.1.0-2 (source amd64) into unstable, unstable (Debian FTP Masters) (signed by: Roland Fehrenbacher)
[2020-05-03] relion REMOVED from testing (Debian testing watch)
[2020-04-17] relion 1.4+dfsg-4 MIGRATED to testing (Debian testing watch)
[2020-04-08] relion REMOVED from testing (Debian testing watch)
[2018-06-20] relion 1.4+dfsg-4 MIGRATED to testing (Debian testing watch)
[2018-06-14] Accepted relion 1.4+dfsg-4 (source) into unstable (Andreas Tille)
[2018-05-01] relion REMOVED from testing (Debian testing watch)
[2017-12-07] Accepted relion 1.4+dfsg-3 (source) into unstable (Gert Wollny)
[2016-07-05] relion 1.4+dfsg-2 MIGRATED to testing (Debian testing watch)
[2016-06-29] Accepted relion 1.4+dfsg-2 (source amd64 all) into unstable (Gert Wollny) (signed by: Andreas Tille)
[2015-12-15] relion 1.4+dfsg-1 MIGRATED to testing (Debian testing watch)
[2015-12-09] Accepted relion 1.4+dfsg-1 (source amd64 all) into unstable, unstable (Roland Fehrenbacher) (signed by: Andreas Tille)
[2015-09-07] relion 1.3+dfsg-3 MIGRATED to testing (Britney)
[2015-08-26] Accepted relion 1.3+dfsg-3 (source amd64 all) into unstable, unstable (Roland Fehrenbacher) (signed by: Andreas Tille)
[2014-11-05] relion 1.3+dfsg-2 MIGRATED to testing (Britney)
[2014-10-26] Accepted relion 1.3+dfsg-2 (source amd64 all) into unstable (Andreas Tille)
[2014-10-25] Accepted relion 1.3+dfsg-1 (source amd64 all) into unstable, unstable (Roland Fehrenbacher) (signed by: Andreas Tille)

bugs [bug history graph]

all: 2
RC: 2
I&N: 0
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian (290, 0)
buildd: logs, cross
popcon
browse source code
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ubuntu

[Information about Ubuntu for Debian Developers]

version: 3.1.3-4build1