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salmon

wicked-fast transcript quantification from RNA-seq data

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general
  • source: salmon (main)
  • version: 1.10.2+ds1-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Kevin Murray [DMD] – Michael R. Crusoe [DMD]
  • arch: arm64
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.4.0+ds1-1
  • oldstable: 1.10.1+ds1-1
  • stable: 1.10.2+ds1-1
  • unstable: 1.10.2+ds1-1
versioned links
  • 1.4.0+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.10.1+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.10.2+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • salmon
action needed
A new upstream version is available: 1.10.3 high
A new upstream version 1.10.3 is available, you should consider packaging it.
Created: 2024-03-19 Last update: 2025-10-08 02:33
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 2-day delay is over. Check why.
Created: 2025-10-05 Last update: 2025-10-08 05:02
lintian reports 2 warnings normal
Lintian reports 2 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2023-03-13 Last update: 2024-02-29 00:12
debian/patches: 2 patches to forward upstream low

Among the 5 debian patches available in version 1.10.2+ds1-1 of the package, we noticed the following issues:

  • 2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-08-17 09:41
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).
Created: 2024-04-07 Last update: 2025-02-27 13:25
testing migrations
  • excuses:
    • Migrates after: rapmap
    • Migration status for salmon (- to 1.10.2+ds1-1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating salmon would introduce bugs in testing: #1097838
    • ∙ ∙ Build-Depends(-Arch): salmon rapmap (not considered)
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/salmon.html
    • ∙ ∙ autopkgtest for salmon/1.10.2+ds1-1: amd64: Pass, arm64: Pass
    • ∙ ∙ Required age reduced by 3 days because of autopkgtest
    • ∙ ∙ 784 days old (needed 2 days)
    • Not considered
news
[rss feed]
  • [2025-10-06] salmon REMOVED from testing (Debian testing watch)
  • [2023-08-18] salmon 1.10.2+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2023-08-16] Accepted salmon 1.10.2+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2023-04-02] salmon 1.10.1+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2023-03-13] Accepted salmon 1.10.1+ds1-1 (source) into unstable (Andreas Tille)
  • [2022-11-11] salmon 1.9.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2022-11-05] Accepted salmon 1.9.0+ds1-1 (source) into unstable (Étienne Mollier)
  • [2022-05-10] salmon REMOVED from testing (Debian testing watch)
  • [2021-12-19] salmon 1.6.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2021-12-13] Accepted salmon 1.6.0+ds1-1 (source) into unstable (Steffen Moeller)
  • [2021-10-16] salmon 1.5.2+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2021-10-11] Accepted salmon 1.5.2+ds1-1 (source) into unstable (Andreas Tille)
  • [2020-12-02] salmon 1.4.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-12-02] salmon 1.4.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-11-26] Accepted salmon 1.4.0+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-09-27] salmon 1.3.0+ds1-3 MIGRATED to testing (Debian testing watch)
  • [2020-09-22] Accepted salmon 1.3.0+ds1-3 (source) into unstable (Andreas Tille)
  • [2020-08-02] salmon 1.3.0+ds1-2 MIGRATED to testing (Debian testing watch)
  • [2020-07-28] Accepted salmon 1.3.0+ds1-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-07-16] Accepted salmon 1.3.0+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-05-04] salmon 1.2.1+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-04-23] Accepted salmon 1.2.1+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-04] salmon 0.12.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2018-12-13] Accepted salmon 0.12.0+ds1-1 (source) into unstable (Andreas Tille)
  • [2018-10-29] salmon REMOVED from testing (Debian testing watch)
  • [2017-12-18] salmon 0.7.2+ds1-3 MIGRATED to testing (Debian testing watch)
  • [2017-12-13] Accepted salmon 0.7.2+ds1-3 (source) into unstable (Gert Wollny)
  • [2016-09-17] salmon 0.7.2+ds1-2 MIGRATED to testing (Debian testing watch)
  • [2016-09-11] Accepted salmon 0.7.2+ds1-2 (source amd64) into unstable (Sascha Steinbiss)
  • [2016-09-10] Accepted salmon 0.7.2+ds1-1 (source amd64) into unstable (Andreas Tille) (signed by: Sascha Steinbiss)
  • 1
  • 2
bugs [bug history graph]
  • all: 3
  • RC: 1
  • I&N: 1
  • M&W: 1
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (0, 2)
  • buildd: logs, cross
  • popcon
  • browse source code
  • edit tags
  • other distros
  • security tracker
  • screenshots
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.10.2+ds1-1build2

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