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salmon

wicked-fast transcript quantification from RNA-seq data

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general
  • source: salmon (main)
  • version: 1.6.0+ds1-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD] – Kevin Murray [DMD]
  • arch: arm64
  • std-ver: 4.6.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 0.7.2+ds1-2
  • oldstable: 0.12.0+ds1-1
  • stable: 1.4.0+ds1-1
  • unstable: 1.6.0+ds1-1
versioned links
  • 0.7.2+ds1-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.12.0+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.4.0+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.6.0+ds1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • salmon
action needed
A new upstream version is available: 1.8.0 high
A new upstream version 1.8.0 is available, you should consider packaging it.
Created: 2022-02-19 Last update: 2022-05-27 19:32
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2022-05-09 Last update: 2022-05-27 19:05
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 1.7.0+ds1-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 08c06fec89b08f8a9668245e38b7b5d326cab4a7
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 20 14:38:23 2022 +0100

    cmake has issues in debian/external/pufferfish.  For the moment
            try to package external dependency https://salsa.debian.org/med-team/twopaco

commit 0311071cdc0d1015fdc560aafdd664cafad8ca68
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 20 12:04:45 2022 +0100

    Update code copy of pufferfish

commit 94312cd5f912d919086d7788f6ff0b74f3e73394
Merge: 2fec337 b91c52c
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 20 08:31:04 2022 +0100

    Update upstream source from tag 'upstream/1.7.0+ds1'
    
    Update to upstream version '1.7.0+ds1'
    with Debian dir 61085c2de6268c624971611a19474e01b2684c63

commit 2fec33720ca41b363164aba80b9b665d95fc6a69
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 20 08:30:59 2022 +0100

    routine-update: New upstream version

commit b91c52c132901bb2e0cb0a54ab4cbfbac3b783e3
Author: Andreas Tille <tille@debian.org>
Date:   Sun Feb 20 08:30:59 2022 +0100

    New upstream version 1.7.0+ds1
Created: 2022-02-20 Last update: 2022-05-27 04:05
Build log checks report 1 warning low
Build log checks report 1 warning
Created: 2021-10-11 Last update: 2021-10-11 16:32
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.6.1 instead of 4.6.0).
Created: 2022-05-11 Last update: 2022-05-11 23:25
testing migrations
  • excuses:
    • Migration status for salmon (- to 1.6.0+ds1-1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating salmon would introduce bugs in testing: #1008252
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/salmon.html
    • ∙ ∙ 164 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2022-05-10] salmon REMOVED from testing (Debian testing watch)
  • [2021-12-19] salmon 1.6.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2021-12-13] Accepted salmon 1.6.0+ds1-1 (source) into unstable (Steffen Moeller)
  • [2021-10-16] salmon 1.5.2+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2021-10-11] Accepted salmon 1.5.2+ds1-1 (source) into unstable (Andreas Tille)
  • [2020-12-02] salmon 1.4.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-12-02] salmon 1.4.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-11-26] Accepted salmon 1.4.0+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-09-27] salmon 1.3.0+ds1-3 MIGRATED to testing (Debian testing watch)
  • [2020-09-22] Accepted salmon 1.3.0+ds1-3 (source) into unstable (Andreas Tille)
  • [2020-08-02] salmon 1.3.0+ds1-2 MIGRATED to testing (Debian testing watch)
  • [2020-07-28] Accepted salmon 1.3.0+ds1-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-07-16] Accepted salmon 1.3.0+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-05-04] salmon 1.2.1+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2020-04-23] Accepted salmon 1.2.1+ds1-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-04] salmon 0.12.0+ds1-1 MIGRATED to testing (Debian testing watch)
  • [2018-12-13] Accepted salmon 0.12.0+ds1-1 (source) into unstable (Andreas Tille)
  • [2018-10-29] salmon REMOVED from testing (Debian testing watch)
  • [2017-12-18] salmon 0.7.2+ds1-3 MIGRATED to testing (Debian testing watch)
  • [2017-12-13] Accepted salmon 0.7.2+ds1-3 (source) into unstable (Gert Wollny)
  • [2016-09-17] salmon 0.7.2+ds1-2 MIGRATED to testing (Debian testing watch)
  • [2016-09-11] Accepted salmon 0.7.2+ds1-2 (source amd64) into unstable (Sascha Steinbiss)
  • [2016-09-10] Accepted salmon 0.7.2+ds1-1 (source amd64) into unstable (Andreas Tille) (signed by: Sascha Steinbiss)
  • [2016-04-11] salmon 0.4.2+ds1-3 MIGRATED to testing (Debian testing watch)
  • [2016-04-06] Accepted salmon 0.4.2+ds1-3 (source amd64) into unstable (Sascha Steinbiss) (signed by: Andreas Tille)
  • [2016-02-13] salmon 0.4.2+ds1-2 MIGRATED to testing (Debian testing watch)
  • [2016-02-07] Accepted salmon 0.4.2+ds1-2 (source) into unstable (Michael R. Crusoe) (signed by: Andreas Tille)
  • [2016-02-05] Accepted salmon 0.4.2+ds1-1 (source amd64) into unstable, unstable (Michael R. Crusoe) (signed by: Andreas Tille)
bugs [bug history graph]
  • all: 4
  • RC: 1
  • I&N: 3
  • M&W: 0
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian
  • buildd: logs, checks, clang, cross
  • popcon
  • browse source code
  • edit tags
  • other distros
  • screenshots
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.4.0+ds1-1build1

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