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samtools

processing sequence alignments in SAM, BAM and CRAM formats

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general

source: samtools (main)
version: 1.9-4
maintainer: Debian Med Packaging Team (archive) [DMD] [LowNMU]
uploaders: Charles Plessy [DMD] – Andreas Tille [DMD]
arch: all any
std-ver: 4.3.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 0.1.19-1
stable: 1.3.1-3
stable-bpo: 1.7-2~bpo9+1
testing: 1.9-4
unstable: 1.9-4

versioned links

0.1.19-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.3.1-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7-2~bpo9+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.9-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

samtools
samtools-test

action needed

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 1.9-5, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 26784c71cda38d22a9d7aac2e4ed34df416d34e3
Author: Andreas Tille <tille@debian.org>
Date:   Sat Mar 16 18:28:18 2019 +0100

    Use <!nocheck> for libio-pty-perl

Created: 2019-03-16 Last update: 2019-04-17 13:26

lintian reports 20 warnings normal

Lintian reports 20 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2019-04-08 Last update: 2019-04-08 07:52

news

[2019-03-04] samtools 1.9-4 MIGRATED to testing (Debian testing watch)
[2019-02-21] Accepted samtools 1.9-4 (source) into unstable (Andreas Tille)
[2019-02-06] samtools 1.9-3 MIGRATED to testing (Debian testing watch)
[2019-02-04] Accepted samtools 1.9-3 (source) into unstable (Andreas Tille)
[2019-01-05] samtools 1.9-2 MIGRATED to testing (Debian testing watch)
[2019-01-03] Accepted samtools 1.9-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2018-09-12] Accepted samtools 1.9-1 (source) into unstable (Andreas Tille)
[2018-05-22] Accepted samtools 1.7-2~bpo9+1 (source amd64 all) into stretch-backports, stretch-backports (Andreas Tille)
[2018-05-03] Accepted samtools 1.8-1 (source) into experimental (Andreas Tille)
[2018-04-04] samtools 1.7-2 MIGRATED to testing (Debian testing watch)
[2018-03-29] Accepted samtools 1.7-2 (source) into unstable (Andreas Tille)
[2018-02-19] samtools 1.7-1 MIGRATED to testing (Debian testing watch)
[2018-02-14] Accepted samtools 1.7-1 (source) into unstable (Andreas Tille)
[2017-12-28] samtools 1.6-4 MIGRATED to testing (Debian testing watch)
[2017-12-23] Accepted samtools 1.6-4 (source) into unstable (Graham Inggs)
[2017-12-14] Accepted samtools 1.6-3 (source) into unstable (Andreas Tille)
[2017-12-13] Accepted samtools 1.6-2 (source) into experimental (Andreas Tille)
[2017-12-11] Accepted samtools 1.6-1 (source) into experimental (Andreas Tille)
[2017-10-29] samtools 1.5-1 MIGRATED to testing (Debian testing watch)
[2017-08-04] Accepted samtools 1.5-1 (source amd64 all) into unstable (Andreas Tille)
[2017-07-24] samtools 1.4.1-1 MIGRATED to testing (Debian testing watch)
[2017-06-18] Accepted samtools 1.4.1-1 (source amd64 all) into unstable (Andreas Tille)
[2017-03-21] Accepted samtools 1.4-1 (source amd64 all) into experimental (Andreas Tille)
[2016-10-30] samtools 1.3.1-3 MIGRATED to testing (Debian testing watch)
[2016-10-25] Accepted samtools 1.3.1-3 (source) into unstable (Sascha Steinbiss)
[2016-08-06] Accepted samtools 1.3.1-2~bpo8+1 (source amd64 all) into jessie-backports (Afif Elghraoui)
[2016-05-14] samtools 1.3.1-2 MIGRATED to testing (Debian testing watch)
[2016-05-08] Accepted samtools 1.3.1-2 (source) into unstable (Charles Plessy)
[2016-05-03] samtools 1.3.1-1 MIGRATED to testing (Debian testing watch)
[2016-04-26] Accepted samtools 1.3.1-1 (source) into unstable (Charles Plessy)

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bugs [bug history graph]

all: 0

links

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lintian (0, 20)
buildd: logs, clang, reproducibility, cross
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ubuntu

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version: 1.9-4

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