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samtools

processing sequence alignments in SAM, BAM and CRAM formats

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general
  • source: samtools (main)
  • version: 1.17-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Étienne Mollier [DMD]
  • arch: all any
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.9-4
  • oldstable: 1.11-1
  • stable: 1.16.1-1
  • testing: 1.17-1
  • unstable: 1.17-1
versioned links
  • 1.9-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.11-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.16.1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.17-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • samtools
  • samtools-test
action needed
A new upstream version is available: 1.18 high
A new upstream version 1.18 is available, you should consider packaging it.
Created: 2023-07-29 Last update: 2023-09-27 23:44
2 new commits since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit 4d39be10bc70da3172d4208f550f751f5c129922
Author: Étienne Mollier <emollier@debian.org>
Date:   Wed Jul 12 21:51:46 2023 +0200

    samtools-fasta-q-whatis.patch: forwarded upstream.

commit e756607e32844189008851093d81c25a6a99b5de
Author: Étienne Mollier <emollier@debian.org>
Date:   Wed Jul 12 21:43:52 2023 +0200

    typos.patch: forwarded upstream.
Created: 2023-07-12 Last update: 2023-09-19 09:30
lintian reports 20 warnings normal
Lintian reports 20 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2022-10-01 Last update: 2023-06-23 10:36
debian/patches: 3 patches to forward upstream low

Among the 3 debian patches available in version 1.17-1 of the package, we noticed the following issues:

  • 3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-06-23 09:03
news
[rss feed]
  • [2023-06-25] samtools 1.17-1 MIGRATED to testing (Debian testing watch)
  • [2023-06-22] Accepted samtools 1.17-1 (source) into unstable (Étienne Mollier)
  • [2023-06-18] Accepted samtools 1.17-0+exp1 (source) into experimental (Étienne Mollier)
  • [2022-10-06] samtools 1.16.1-1 MIGRATED to testing (Debian testing watch)
  • [2022-09-30] Accepted samtools 1.16.1-1 (source) into unstable (Andreas Tille)
  • [2021-12-08] Accepted samtools 1.14-1~exp2 (source) into experimental (Andreas Tille)
  • [2021-12-07] Accepted samtools 1.14-1~exp1 (source) into experimental (Andreas Tille)
  • [2021-10-28] samtools 1.13-4 MIGRATED to testing (Debian testing watch)
  • [2021-10-25] Accepted samtools 1.13-4 (source) into unstable (Étienne Mollier)
  • [2021-10-24] Accepted samtools 1.13-3 (source) into unstable (Étienne Mollier)
  • [2021-09-02] samtools 1.13-2 MIGRATED to testing (Debian testing watch)
  • [2021-08-30] Accepted samtools 1.13-2 (source) into unstable (Andreas Tille)
  • [2021-08-27] Accepted samtools 1.13-1 (source) into unstable (Étienne Mollier)
  • [2020-10-07] samtools 1.11-1 MIGRATED to testing (Debian testing watch)
  • [2020-10-07] samtools 1.11-1 MIGRATED to testing (Debian testing watch)
  • [2020-10-01] Accepted samtools 1.11-1 (source) into unstable (Andreas Tille)
  • [2020-06-21] samtools 1.10-4 MIGRATED to testing (Debian testing watch)
  • [2020-06-19] Accepted samtools 1.10-4 (source) into unstable (Andreas Tille)
  • [2020-01-27] samtools 1.10-3 MIGRATED to testing (Debian testing watch)
  • [2019-12-25] Accepted samtools 1.10-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-25] Accepted samtools 1.10-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-16] Accepted samtools 1.10-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-13] samtools 1.9-7 MIGRATED to testing (Debian testing watch)
  • [2019-12-11] Accepted samtools 1.9-7 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-05] samtools 1.9-6 MIGRATED to testing (Debian testing watch)
  • [2019-12-03] Accepted samtools 1.9-6 (source) into unstable (Andreas Tille)
  • [2019-08-20] samtools 1.9-5 MIGRATED to testing (Debian testing watch)
  • [2019-08-17] Accepted samtools 1.9-5 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-03-04] samtools 1.9-4 MIGRATED to testing (Debian testing watch)
  • [2019-02-21] Accepted samtools 1.9-4 (source) into unstable (Andreas Tille)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
links
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  • version: 1.17-1
  • 1 bug

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