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snpeff

genetic variant annotation and effect prediction toolbox - tool

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general
  • source: snpeff (main)
  • version: 5.4.b+dfsg-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Pierre Gruet [DMD]
  • arch: all
  • std-ver: 4.7.3
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 5.1+d+dfsg-3
  • stable: 5.2.f+dfsg-1
  • testing: 5.4.b+dfsg-1
  • unstable: 5.4.b+dfsg-1
versioned links
  • 5.1+d+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 5.2.f+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 5.4.b+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • libsnpeff-java
  • libsnpeff-java-doc
  • snpeff
action needed
Marked for autoremoval on 29 March due to sra-sdk: #1126172 high
Version 5.4.b+dfsg-1 of snpeff is marked for autoremoval from testing on Sun 29 Mar 2026. It depends (transitively) on sra-sdk, affected by #1126172. You should try to prevent the removal by fixing these RC bugs.
Created: 2026-02-18 Last update: 2026-02-28 21:00
A new upstream version is available: 5.4c high
A new upstream version 5.4c is available, you should consider packaging it.
Created: 2026-02-25 Last update: 2026-02-28 19:32
Does not build reproducibly during testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2026-02-24 Last update: 2026-02-28 21:30
1 new commit since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit c337f2331b45dad319ea372f6de85eea8c16c5da
Author: Alexandre Detiste <alexandre.detiste@gmail.com>
Date:   Fri Feb 27 17:02:43 2026 +0100

    autopkgtest does not need "quilt" anymore
Created: 2026-02-27 Last update: 2026-02-27 17:01
news
[rss feed]
  • [2026-02-24] snpeff 5.4.b+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2026-02-21] Accepted snpeff 5.4.b+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2025-02-21] snpeff 5.2.f+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2025-02-16] Accepted snpeff 5.2.f+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2025-02-05] snpeff REMOVED from testing (Debian testing watch)
  • [2024-10-11] snpeff 5.2.e+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-10-05] Accepted snpeff 5.2.e+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2023-12-04] snpeff 5.2.b+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-11-28] Accepted snpeff 5.2.b+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-01-26] snpeff 5.1+d+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2023-01-20] Accepted snpeff 5.1+d+dfsg-3 (source) into unstable (Pierre Gruet)
  • [2023-01-18] snpeff 5.1+d+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2023-01-12] Accepted snpeff 5.1+d+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2022-06-05] snpeff 5.1+d+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-06-02] Accepted snpeff 5.1+d+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-02-26] snpeff 5.1+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2022-02-24] Accepted snpeff 5.1+dfsg-2 (source) into unstable (Pierre Gruet)
  • [2022-02-13] snpeff 5.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-02-09] Accepted snpeff 5.1+dfsg-1 (source) into unstable (Pierre Gruet)
  • [2022-01-29] snpeff 4.3t+dfsg1-2 MIGRATED to testing (Debian testing watch)
  • [2022-01-22] Accepted snpeff 4.3t+dfsg1-2 (source) into unstable (Pierre Gruet)
  • [2022-01-22] Accepted snpeff 4.3t+dfsg1-1 (source all) into experimental, experimental (Debian FTP Masters) (signed by: Pierre Gruet)
bugs [bug history graph]
  • all: 0
links
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ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 5.2.f+dfsg-1build1

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