Register | Log in

spades

genome assembler for single-cell and isolates data sets

Choose email to subscribe with

general

source: spades (main)
version: 4.0.0+really3.15.5+dfsg-2
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Sascha Steinbiss [DMD] – Alexandre Mestiashvili [DMD] – Michael R. Crusoe [DMD] – Étienne Mollier [DMD]
arch: amd64
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 3.13.1+dfsg-2
oldstable: 3.15.5+dfsg-2
stable: 4.0.0+really3.15.5+dfsg-1
testing: 4.0.0+really3.15.5+dfsg-1
unstable: 4.0.0+really3.15.5+dfsg-2

versioned links

3.13.1+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
3.15.5+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
4.0.0+really3.15.5+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
4.0.0+really3.15.5+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

spades

action needed

Marked for autoremoval on 19 October: #1097913 high

Version 4.0.0+really3.15.5+dfsg-1 of spades is marked for autoremoval from testing on Sun 19 Oct 2025. It is affected by #1097913. The removal of spades will also cause the removal of (transitive) reverse dependencies: ariba, shovill, unicycler. You should try to prevent the removal by fixing these RC bugs.

Created: 2025-09-04 Last update: 2025-09-20 19:02

A new upstream version is available: 4.2.0 high

A new upstream version 4.2.0 is available, you should consider packaging it.

Created: 2025-02-24 Last update: 2025-09-20 18:31

debian/patches: 8 patches to forward upstream low

Among the 21 debian patches available in version 4.0.0+really3.15.5+dfsg-2 of the package, we noticed the following issues:

8 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-09-20 07:32

testing migrations

This package will soon be part of the auto-libssw transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migration status for spades (4.0.0+really3.15.5+dfsg-1 to 4.0.0+really3.15.5+dfsg-2): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Waiting for lintian test results (stalls migration) - info
- ∙ ∙ Too young, only 0 of 2 days old
- Additional info:
- ∙ ∙ Updating spades will fix bugs in testing: #1097913
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/spades.html
- ∙ ∙ autopkgtest for spades/4.0.0+really3.15.5+dfsg-2: amd64: Pass
- ∙ ∙ Reproducible on amd64 - info ♻
- ∙ ∙ Waiting for reproducibility test results on arm64 - info ♻
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- Not considered

news

[2025-09-19] Accepted spades 4.0.0+really3.15.5+dfsg-2 (source) into unstable (Nilesh Patra)
[2025-04-14] spades 4.0.0+really3.15.5+dfsg-1 MIGRATED to testing (Debian testing watch)
[2025-04-12] Accepted spades 4.0.0+really3.15.5+dfsg-1 (source) into unstable (Pierre Gruet)
[2025-02-16] Accepted spades 4.0.0+dfsg1-2 (source) into unstable (Andreas Tille)
[2024-12-16] spades 3.15.5+dfsg-8 MIGRATED to testing (Debian testing watch)
[2024-12-13] Accepted spades 3.15.5+dfsg-8 (source) into unstable (Pierre Gruet)
[2024-10-02] Accepted spades 4.0.0+dfsg1-1 (source) into experimental (Pierre Gruet)
[2024-02-04] spades 3.15.5+dfsg-7 MIGRATED to testing (Debian testing watch)
[2024-02-02] Accepted spades 3.15.5+dfsg-7 (source) into unstable (Andreas Tille)
[2023-12-06] spades 3.15.5+dfsg-6 MIGRATED to testing (Debian testing watch)
[2023-12-03] Accepted spades 3.15.5+dfsg-6 (source) into unstable (Étienne Mollier)
[2023-09-23] spades 3.15.5+dfsg-5 MIGRATED to testing (Debian testing watch)
[2023-09-21] Accepted spades 3.15.5+dfsg-5 (source) into unstable (Andreas Tille)
[2023-08-11] spades 3.15.5+dfsg-4 MIGRATED to testing (Debian testing watch)
[2023-08-09] Accepted spades 3.15.5+dfsg-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2023-07-23] spades 3.15.5+dfsg-3 MIGRATED to testing (Debian testing watch)
[2023-07-20] Accepted spades 3.15.5+dfsg-3 (source) into unstable (Bo YU) (signed by: Étienne Mollier)
[2022-10-26] spades 3.15.5+dfsg-2 MIGRATED to testing (Debian testing watch)
[2022-10-23] Accepted spades 3.15.5+dfsg-2 (source) into unstable (Étienne Mollier)
[2022-08-05] spades 3.15.5+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-08-02] Accepted spades 3.15.5+dfsg-1 (source) into unstable (Étienne Mollier)
[2022-06-28] spades 3.15.4+dfsg-3 MIGRATED to testing (Debian testing watch)
[2022-06-25] Accepted spades 3.15.4+dfsg-3 (source) into unstable (Étienne Mollier)
[2022-05-13] Accepted spades 3.15.4+dfsg-2 (source) into unstable (Lance Lin) (signed by: Andreas Tille)
[2022-04-15] spades 3.15.4+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-04-12] Accepted spades 3.15.4+dfsg-1 (source) into unstable (Étienne Mollier)
[2019-12-13] Accepted spades 3.13.1+dfsg-2~bpo9+1 (source amd64) into stretch-backports-sloppy->backports-policy, stretch-backports-sloppy (Andreas Tille)
[2019-11-27] spades 3.13.1+dfsg-2 MIGRATED to testing (Debian testing watch)
[2019-11-22] Accepted spades 3.13.1+dfsg-2 (source) into unstable (Andreas Tille)
[2019-11-18] Accepted spades 3.13.1+dfsg-1 (source) into unstable (Andreas Tille)

1
2

bugs [bug history graph]

all: 3
RC: 0
I&N: 1
M&W: 2
F&P: 0
patch: 0

links

homepage
buildd: logs, reproducibility, cross
popcon
browse source code
edit tags
other distros
screenshots
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 4.0.0+really3.15.5+dfsg-1

Debian Package Tracker — Copyright 2013-2025 The Distro Tracker Developers

Report problems to the tracker.debian.org pseudo-package in the Debian BTS.

Documentation — Bugs — Git Repository — Contributing