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subread

toolkit for processing next-gen sequencing data

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general
  • source: subread (main)
  • version: 2.0.4+dfsg-1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Alexandre Mestiashvili [DMD]
  • arch: all amd64 arm64 armel armhf i386 kfreebsd-amd64 kfreebsd-i386 ppc64el
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 1.6.3+dfsg-1
  • old-bpo: 2.0.0+dfsg-1~bpo10+1
  • stable: 2.0.1+dfsg-1
  • testing: 2.0.3+dfsg-1
  • unstable: 2.0.4+dfsg-1
versioned links
  • 1.6.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.0.0+dfsg-1~bpo10+1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.0.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.0.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.0.4+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • subread
  • subread-data
action needed
A new upstream version is available: 2.0.6 high
A new upstream version 2.0.6 is available, you should consider packaging it.
Created: 2023-04-20 Last update: 2023-05-17 06:34
Build log checks report 1 error and 1 warning high
Build log checks report 1 error and 1 warning
Created: 2019-09-05 Last update: 2023-03-11 16:00
1 bug tagged patch in the BTS normal
The BTS contains patches fixing 1 bug, consider including or untagging them.
Created: 2023-03-17 Last update: 2023-05-17 12:33
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 20-day delay is over. Check why.
Created: 2023-03-31 Last update: 2023-05-17 11:08
9 new commits since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit 8d8c4601c9c541c83e07be5f3e18041e7c3c5a8a
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:59:51 2023 +0100

    Update d/changelog

commit c0ce659c04099ca3b25086a9392d458129cebc77
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:49:01 2023 +0100

    d/control, bump debhelper-compat and policy versions

commit c496fae2d94ed9b9319fe899300b1a142f4ea38b
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:48:40 2023 +0100

    remove unused d/filter.pl

commit dd6cd9449fe19a276182b7dc92bfb337d1aff00f
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:48:23 2023 +0100

    d/*.1, generate manpages

commit 7787ecc176da31aad198a6767a3e2676815f9c4a
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:47:51 2023 +0100

    d/patches, update and refresh
    
    Incorporare cross patch into arch_specific_flags.patch

commit 175e9fe4f23138348a909f64ef13984cdd6993f2
Merge: 6e40bf0 1a8f93e
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:47:35 2023 +0100

    Update upstream source from tag 'upstream/2.0.4+dfsg'
    
    Update to upstream version '2.0.4+dfsg'
    with Debian dir 418ab6b282939b8f2254ca55f6d5ce3e0341b44d

commit 1a8f93e9a1b765f664a13936128f44c4a8a57d24
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:46:46 2023 +0100

    New upstream version 2.0.4+dfsg

commit 6e40bf0f1d292e263cbbd55b72b4966f03a4e462
Author: Alexandre Mestiashvili <mestia@debian.org>
Date:   Sat Mar 11 12:46:13 2023 +0100

    d/copyright, remove .o files and prebuilt binary from src/longread-one

commit 9221d0bd1243ae463ab2b563da8356c5c14da5c5
Author: Nilesh Patra <nilesh@nileshpatra.info>
Date:   Sat Oct 1 00:17:45 2022 +0530

    [skip ci] Remove myself from uploaders
Created: 2022-09-30 Last update: 2023-05-14 09:00
lintian reports 1 warning normal
Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.
Created: 2023-03-11 Last update: 2023-03-11 21:36
Multiarch hinter reports 1 issue(s) low
There are issues with the multiarch metadata for this package.
  • subread-data could be marked Multi-Arch: foreign
Created: 2016-09-14 Last update: 2023-05-17 06:36
debian/patches: 4 patches to forward upstream low

Among the 4 debian patches available in version 2.0.4+dfsg-1 of the package, we noticed the following issues:

  • 4 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-03-11 21:42
testing migrations
  • excuses:
    • Migration status for subread (2.0.3+dfsg-1 to 2.0.4+dfsg-1): BLOCKED: Needs an approval (either due to a freeze, the source suite or a manual hint)
    • Issues preventing migration:
    • ∙ ∙ blocked by freeze: autopkgtest not fully successful (Follow the freeze policy when applying for an unblock)
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/subread.html
    • ∙ ∙ autopkgtest for subread/2.0.4+dfsg-1: amd64: Pass, arm64: Pass, armel: Pass, armhf: Pass, i386: Pass, ppc64el: Pass, s390x: Failed (not a regression)
    • ∙ ∙ 67 days old (needed 20 days)
    • Not considered
news
[rss feed]
  • [2023-03-11] Accepted subread 2.0.4+dfsg-1 (source) into unstable (Alexandre Mestiashvili)
  • [2021-08-18] subread 2.0.3+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-08-15] Accepted subread 2.0.3+dfsg-1 (source) into unstable (Nilesh Patra)
  • [2020-05-25] subread 2.0.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2020-05-22] Accepted subread 2.0.1+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2020-04-23] subread 2.0.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2020-04-18] Accepted subread 2.0.0+dfsg-2 (source) into unstable (Nilesh Patra) (signed by: Andreas Tille)
  • [2020-02-25] Accepted subread 2.0.0+dfsg-1~bpo10+1 (source all amd64) into buster-backports, buster-backports (Alexandre Mestiashvili)
  • [2019-09-07] subread 2.0.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-09-05] Accepted subread 2.0.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2019-08-09] Accepted subread 1.6.5+dfsg-1 (source all amd64) into unstable (Steffen Moeller)
  • [2019-07-13] subread 1.6.4+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-07-10] Accepted subread 1.6.4+dfsg-1 (source) into unstable (Alexandre Mestiashvili) (signed by: Andreas Tille)
  • [2019-02-02] subread 1.6.3+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-01-30] Accepted subread 1.6.3+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2018-05-21] subread 1.6.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2018-05-18] Accepted subread 1.6.2+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2018-04-11] subread 1.6.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2018-04-10] subread 1.6.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2018-04-04] Accepted subread 1.6.1+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2017-11-23] subread 1.6.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2017-11-17] Accepted subread 1.6.0+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2017-08-03] subread 1.5.3+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2017-07-28] Accepted subread 1.5.3+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2017-07-14] Accepted subread 1.5.1+dfsg-4~bpo8+1 (source amd64 all) into jessie-backports->backports-policy, jessie-backports (Andreas Tille)
  • [2017-06-20] subread 1.5.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2017-03-21] Accepted subread 1.5.2+dfsg-1 (source all amd64) into unstable (Alexandre Mestiashvili)
  • [2016-12-08] subread 1.5.1+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2016-12-02] Accepted subread 1.5.1+dfsg-4 (source all amd64) into unstable (Andreas Tille)
  • [2016-09-11] subread 1.5.1+dfsg-3 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 0
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 1
links
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  • buildd: logs, checks, reproducibility, cross
  • popcon
  • browse source code
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  • screenshots
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  • debci
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  • version: 2.0.4+dfsg-1

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