pymatgen - Debian Package Tracker

general

source: pymatgen (main)
version: 2025.10.7+dfsg1-1
maintainer: Debichem Team (archive) (DMD)
uploaders: Drew Parsons [DMD]
arch: all any
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 2022.11.7+dfsg1-11+deb12u1
old-sec: 2022.11.7+dfsg1-11+deb12u1
stable: 2025.2.18+dfsg1-5
unstable: 2025.10.7+dfsg1-1

versioned links

2022.11.7+dfsg1-11+deb12u1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2025.2.18+dfsg1-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2025.10.7+dfsg1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

python-pymatgen-doc
python3-pymatgen (1 bugs: 0, 1, 0, 0)

action needed

Debci reports failed tests high

unstable: fail (log)
The tests ran in 0:21:43
Last run: 2026-04-11T14:41:44.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:22:13
Last run: 2025-12-26T14:30:52.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:38:55
Last run: 2025-11-09T14:52:24.000Z
Previous status: unknown

Created: 2025-10-17 Last update: 2026-04-21 21:31

A new upstream version is available: 2026.3.23 high

A new upstream version 2026.3.23 is available, you should consider packaging it.

Created: 2026-02-26 Last update: 2026-04-21 21:30

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2026-04-13 Last update: 2026-04-21 22:32

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 2026.3.23+dfsg1-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 6a82919cda971bf2b6fb42eba49670b46f32ac3e
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 15 13:54:48 2026 +0200

    set python3-pymatgen to Architecture: all
    
    Binary (cython) extensions have been moved to pymatgen-core

commit 7fb0de20a34fc2ecb2c6aa604a93431f2f9f594f
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 15 08:30:19 2026 +0200

    add debian patch move_pymatgen-core_9ac43d4.patch
    
    applies upstream commit 9ac43d47d5a1e897e037aa8a6cd8e5b9d65ef637
    removing files which have been moved to pymatgen-core
    
    https://github.com/materialsproject/pymatgen/commit/9ac43d47d5a1e897e037aa8a6cd8e5b9d65ef637

commit 445176c781fb63d25ae321feb57b989033eaaf63
Author: Drew Parsons <dparsons@debian.org>
Date:   Tue Apr 14 23:56:58 2026 +0200

    skip test_pmg_view in test_pmg.py
    
    generates an XIO error when shutting down (after successfully running
    the test)
    
    .pybuild/test_python3.13/tests/cli/test_pmg.py::test_pmg_view PASSED                                                                                             [100%]
    
    ============================================================= 1 passed, 3 deselected, 1 warning in 3.07s ==============================================================
    XIO:  fatal IO error 22 (Invalid argument) on X server ":2"
          after 76 requests (76 known processed) with 1 events remaining.

commit 91eb49cc8ad5efc0f461c927b7d14142b823efb4
Author: Drew Parsons <dparsons@debian.org>
Date:   Tue Apr 14 23:23:40 2026 +0200

    drop all test skips
    
    Clean sweep for new refactored version.

commit cccf9a91ad72c0279a3115e41e9b3bd7d70dfa8f
Author: Drew Parsons <dparsons@debian.org>
Date:   Tue Apr 14 22:47:20 2026 +0200

    add debian patch manage_tests.patch
    
    helps tests to pass smoothly
    
    - analysis/test_phase_diagram.py: run matplotlib test with Agg
      backend to not display the plot window itself
      (why is pymatgen running the same tests as pymatgen-core?)

commit 882032bcaf386d9416b2ada916a2fc98c45306dd
Author: Drew Parsons <dparsons@debian.org>
Date:   Tue Apr 14 22:18:21 2026 +0200

    Build-Depends: python3-pymatgen-core and versioned depends
    
    update versioned Build-Depends: python3-netcdf4 (>= 1.7.2~)
    
    test Depends: pymatgen-test-files (>= 2026.3.23~)
    pymatgen-test-files moved test files to test-files subdir

commit 3075e798fc09101ac4cbfdcafb73dd0ba4e3a0cf
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 17:46:53 2026 +0200

    refresh patches

commit e77476e431791c768dcfd209d4c5a4f4f7141dab
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 17:21:08 2026 +0200

    massive refactoring deprecates debian patches
    
    many components moved into separate pymatgen-core package
    therefore removing test files.
    
    Removes io/vasp (test_outputs.py). Closes: #1030722.
    
    Removes io/test_packmol.py. Closes: #1118027.
    
    Deprecates debian patches:
     do-not-access-internet-during-build.patch
     skip-performance-tests.patch
     skip_nonfree_testfile.patch
     tests_init.patch
     test_files_writing.patch
     test_lammps_regex_path.patch
     tests_pass_or_skip.patch

commit e6fc47b58e85de592b9dcd21fd443e36ec06f1bb
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 17:02:42 2026 +0200

    mark new upstream release in changelog

commit 168e3e10495bc43c782a28ed3275aca271424abb
Merge: 8dd55d9 3e13689
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 17:01:36 2026 +0200

    Update upstream source from tag 'upstream/2026.3.23+dfsg1'
    
    Update to upstream version '2026.3.23+dfsg1'
    with Debian dir 726d01d42508968e5cf4d6626d002cd2f7f78a94

commit 3e13689f4c84477959e3f92fb865cc5201454262
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 17:01:22 2026 +0200

    New upstream version 2026.3.23+dfsg1

commit 8dd55d93d7d7a5a97bdaa2a0c1513a4a597f994a
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 16:37:26 2026 +0200

    update Files-Excluded: in debian/copyright
    
    new release moves tests/files to test-files

commit ce2f9b4d16dff04b9873238a1813f92a21e249d9
Author: Drew Parsons <dparsons@debian.org>
Date:   Wed Apr 8 15:32:32 2026 +0200

    update debian/watch to v5 GitHub template
    
    - use Dversion-Mangle: auto
    
    - add explicit Uversion-Mangle to catch older alpha (a)
      and beta (b) releases

Created: 2026-04-15 Last update: 2026-04-15 14:30

1 low-priority security issue in bookworm low

There is 1 open security issue in bookworm.

1 issue left for the package maintainer to handle:

CVE-2022-42964: (needs triaging) An exponential ReDoS (Regular Expression Denial of Service) can be triggered in the pymatgen PyPI package, when an attacker is able to supply arbitrary input to the GaussianInput.from_string method

You can find information about how to handle this issue in the security team's documentation.

Created: 2023-06-10 Last update: 2025-12-27 17:31

debian/patches: 13 patches to forward upstream low

Among the 13 debian patches available in version 2025.10.7+dfsg1-1 of the package, we noticed the following issues:

13 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-10-13 14:04

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.2).

Created: 2025-12-23 Last update: 2026-03-31 15:01

testing migrations

excuses:
- Migration status for pymatgen (- to 2025.10.7+dfsg1-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating pymatgen would introduce bugs in testing: #1118027
- ∙ ∙ Autopkgtest for pymatgen/2025.10.7+dfsg1-1: amd64: Failed ♻, riscv64: Failed ♻
- ∙ ∙ Missing build on arm64
- ∙ ∙ Missing build on armhf
- ∙ ∙ Missing build on i386
- ∙ ∙ Missing build on ppc64el
- ∙ ∙ Missing build on s390x
- ∙ ∙ Autopkgtest deferred on arm64: missing arch:arm64 build
- ∙ ∙ Autopkgtest deferred on i386: missing arch:i386 build
- ∙ ∙ Autopkgtest deferred on ppc64el: missing arch:ppc64el build
- ∙ ∙ Autopkgtest deferred on s390x: missing arch:s390x build
- ∙ ∙ Lintian check waiting for test results on s390x, armhf, arm64, i386, ppc64el - info
- ∙ ∙ Reproducibility check deferred on arm64: missing builds
- ∙ ∙ Reproducibility check deferred on armhf: missing builds
- ∙ ∙ Reproducibility check deferred on i386: missing builds
- ∙ ∙ Reproducibility check deferred on ppc64el: missing builds
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/p/pymatgen.html
- ∙ ∙ Reproduced on amd64
- ∙ ∙ 191 days old (needed 5 days)
- Not considered

news

[rss feed]

[2025-12-28] pymatgen REMOVED from testing (Debian testing watch)
[2025-10-13] Accepted pymatgen 2025.10.7+dfsg1-1 (source) into unstable (Drew Parsons)
[2025-06-15] pymatgen 2025.2.18+dfsg1-5 MIGRATED to testing (Debian testing watch)
[2025-06-08] Accepted pymatgen 2025.2.18+dfsg1-5 (source) into unstable (Santiago Vila)
[2025-03-08] pymatgen 2025.2.18+dfsg1-4 MIGRATED to testing (Debian testing watch)
[2025-02-27] Accepted pymatgen 2025.2.18+dfsg1-4 (source) into unstable (Drew Parsons)
[2025-02-25] Accepted pymatgen 2025.2.18+dfsg1-3 (source) into unstable (Drew Parsons)
[2025-02-25] Accepted pymatgen 2025.2.18+dfsg1-2 (source) into unstable (Drew Parsons)
[2025-02-21] Accepted pymatgen 2025.2.18+dfsg1-1 (source) into unstable (Drew Parsons)
[2025-02-14] Accepted pymatgen 2024.10.29+dfsg1-5 (source) into unstable (Drew Parsons)
[2025-01-22] pymatgen REMOVED from testing (Debian testing watch)
[2024-11-30] pymatgen 2024.10.29+dfsg1-4 MIGRATED to testing (Debian testing watch)
[2024-11-24] Accepted pymatgen 2024.10.29+dfsg1-4 (source) into unstable (Drew Parsons)
[2024-11-13] pymatgen 2024.10.29+dfsg1-3 MIGRATED to testing (Debian testing watch)
[2024-11-10] Accepted pymatgen 2024.10.29+dfsg1-3 (source) into unstable (Drew Parsons)
[2024-11-09] Accepted pymatgen 2024.10.29+dfsg1-2 (source) into unstable (Drew Parsons)
[2024-11-08] Accepted pymatgen 2024.10.29+dfsg1-1 (source) into unstable (Drew Parsons)
[2024-11-07] pymatgen REMOVED from testing (Debian testing watch)
[2024-09-01] Accepted pymatgen 2022.11.7+dfsg1-11+deb12u1 (source) into proposed-updates (Debian FTP Masters) (signed by: Moritz Mühlenhoff)
[2024-08-31] pymatgen 2024.6.10+dfsg1-8 MIGRATED to testing (Debian testing watch)
[2024-08-30] Accepted pymatgen 2022.11.7+dfsg1-11+deb12u1 (source) into stable-security (Debian FTP Masters) (signed by: Moritz Mühlenhoff)
[2024-08-12] Accepted pymatgen 2024.6.10+dfsg1-8 (source) into unstable (Drew Parsons)
[2024-08-11] Accepted pymatgen 2024.6.10+dfsg1-7 (source) into unstable (Drew Parsons)
[2024-08-10] Accepted pymatgen 2024.6.10+dfsg1-6 (source) into unstable (Drew Parsons)
[2024-08-09] Accepted pymatgen 2024.6.10+dfsg1-5 (source) into unstable (Drew Parsons)
[2024-08-04] Accepted pymatgen 2024.6.10+dfsg1-4 (source) into unstable (Drew Parsons)
[2024-08-04] Accepted pymatgen 2024.6.10+dfsg1-3 (source) into unstable (Drew Parsons)
[2024-08-03] Accepted pymatgen 2024.6.10+dfsg1-2 (source) into unstable (Drew Parsons)
[2024-08-03] Accepted pymatgen 2024.6.10+dfsg1-1 (source) into unstable (Drew Parsons)
[2024-04-07] pymatgen 2024.1.27+dfsg1-7 MIGRATED to testing (Debian testing watch)

bugs [bug history graph]

all: 3
RC: 1
I&N: 1
M&W: 1
F&P: 0
patch: 0

links

homepage
lintian
buildd: logs, cross
popcon
browse source code
other distros
security tracker
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 2025.10.7+dfsg1-1ubuntu2
1 bug
patches for 2025.10.7+dfsg1-1ubuntu2