python-biopython - Debian Package Tracker

general

source: python-biopython (main)
version: 1.84+dfsg-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Étienne Mollier [DMD] – Andreas Tille [DMD] – Charles Plessy [DMD]
arch: all any
std-ver: 4.7.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.73+dfsg-1
oldstable: 1.78+dfsg-4
stable: 1.80+dfsg-4
testing: 1.84+dfsg-4
unstable: 1.84+dfsg-4

versioned links

1.73+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.78+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.80+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.84+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

python-biopython-doc
python3-biopython
python3-biopython-sql

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in an unknown time
Last run: 2024-11-01T00:27:46.000Z
Previous status: unknown

testing: fail (log)
The tests ran in an unknown time
Last run: 2024-10-31T22:13:09.000Z
Previous status: unknown

stable: pass (log)
The tests ran in an unknown time
Last run: 2024-10-20T07:27:57.000Z
Previous status: unknown

Created: 2024-10-24 Last update: 2024-11-21 11:04

Marked for autoremoval on 21 December due to phyml: #1086912 high

Version 1.84+dfsg-4 of python-biopython is marked for autoremoval from testing on Sat 21 Dec 2024. It depends (transitively) on phyml, affected by #1086912. You should try to prevent the removal by fixing these RC bugs.

Created: 2024-11-14 Last update: 2024-11-21 11:03

Depends on packages which need a new maintainer normal

The packages that python-biopython depends on which need a new maintainer are:

w3c-sgml-lib (#739087)
- Depends: w3c-sgml-lib

Created: 2022-03-06 Last update: 2024-11-21 10:28

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 1.84+dfsg-5, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit abbdc7edef831e561a4bf2813bb3abae753ae95a
Author: Étienne Mollier <emollier@debian.org>
Date:   Thu Oct 31 23:20:49 2024 +0100

    d/changelog: initialise new entry.

commit cb94010c7ac9dc0fce63b80689f5d1a3697cb9f0
Author: Étienne Mollier <emollier@debian.org>
Date:   Thu Oct 31 23:10:57 2024 +0100

    d/t/mini-ccd.cif: include definition of SO4 molecule.
    
    The definition originates from PDB's components.cif as of 2024-10-30.
    This resolves the noisy warning when running test_PDB_DSSP.

Created: 2024-11-01 Last update: 2024-11-18 12:36

lintian reports 1 warning normal

Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.

Created: 2024-11-01 Last update: 2024-11-01 03:04

debian/patches: 2 patches to forward upstream low

Among the 8 debian patches available in version 1.84+dfsg-4 of the package, we noticed the following issues:

2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2024-09-14 Last update: 2024-10-31 16:01

testing migrations

This package will soon be part of the numpy2 transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.

news

[rss feed]

[2024-11-02] python-biopython 1.84+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-10-31] Accepted python-biopython 1.84+dfsg-4 (source) into unstable (Étienne Mollier)
[2024-10-20] python-biopython 1.84+dfsg-3 MIGRATED to testing (Debian testing watch)
[2024-10-18] Accepted python-biopython 1.84+dfsg-3 (source) into unstable (Étienne Mollier)
[2024-09-25] Accepted python-biopython 1.84+dfsg-2 (source) into unstable (Étienne Mollier)
[2024-09-23] Accepted python-biopython 1.84+dfsg-1 (source) into unstable (Étienne Mollier)
[2024-09-20] python-biopython 1.83+dfsg1-5 MIGRATED to testing (Debian testing watch)
[2024-09-16] Accepted python-biopython 1.84+dfsg-1~0exp1 (source) into experimental (Étienne Mollier)
[2024-09-14] Accepted python-biopython 1.83+dfsg1-5 (source) into unstable (Michael R. Crusoe)
[2024-09-08] python-biopython 1.83+dfsg1-4 MIGRATED to testing (Debian testing watch)
[2024-09-06] Accepted python-biopython 1.83+dfsg1-4 (source) into unstable (Étienne Mollier)
[2024-05-25] python-biopython 1.83+dfsg1-3 MIGRATED to testing (Debian testing watch)
[2024-05-22] Accepted python-biopython 1.83+dfsg1-3 (source) into unstable (Étienne Mollier)
[2024-05-03] python-biopython 1.83+dfsg1-2 MIGRATED to testing (Debian testing watch)
[2024-04-17] Accepted python-biopython 1.83+dfsg1-2 (source) into unstable (Andrius Merkys)
[2024-03-21] Accepted python-biopython 1.83+dfsg1-1 (source) into unstable (Étienne Mollier)
[2024-03-10] Accepted python-biopython 1.83+dfsg-1 (source) into unstable (Étienne Mollier)
[2023-12-24] python-biopython 1.81+dfsg-3 MIGRATED to testing (Debian testing watch)
[2023-12-19] Accepted python-biopython 1.81+dfsg-3 (source) into unstable (Étienne Mollier)
[2023-11-14] python-biopython 1.81+dfsg-2 MIGRATED to testing (Debian testing watch)
[2023-11-11] Accepted python-biopython 1.81+dfsg-2 (source) into unstable (Étienne Mollier)
[2023-07-18] python-biopython 1.81+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-15] Accepted python-biopython 1.81+dfsg-1 (source) into unstable (Étienne Mollier)
[2023-07-13] python-biopython 1.80+dfsg-6 MIGRATED to testing (Debian testing watch)
[2023-07-10] Accepted python-biopython 1.80+dfsg-6 (source) into unstable (Étienne Mollier)
[2023-07-09] Accepted python-biopython 1.81+dfsg-0+exp1 (source) into experimental (Étienne Mollier)
[2023-07-09] Accepted python-biopython 1.80+dfsg-5 (source) into unstable (Étienne Mollier)
[2023-01-01] python-biopython 1.80+dfsg-4 MIGRATED to testing (Debian testing watch)
[2022-12-29] Accepted python-biopython 1.80+dfsg-4 (source) into unstable (Nilesh Patra)
[2022-12-26] python-biopython 1.80+dfsg-3 MIGRATED to testing (Debian testing watch)

bugs [bug history graph]

all: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.83+dfsg1-3