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python-biopython

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general
  • source: python-biopython (main)
  • version: 1.85+dfsg-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Étienne Mollier [DMD] – Andreas Tille [DMD] – Charles Plessy [DMD]
  • arch: all any
  • std-ver: 4.7.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.78+dfsg-4
  • oldstable: 1.80+dfsg-4
  • stable: 1.85+dfsg-4
  • testing: 1.85+dfsg-4
  • unstable: 1.85+dfsg-4
versioned links
  • 1.78+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.80+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.85+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • python-biopython-doc
  • python3-biopython
  • python3-biopython-sql
action needed
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:16:11
    Last run: 2025-09-08T19:02:18.000Z
    Previous status: unknown

  • testing: fail (log)
    The tests ran in 0:12:57
    Last run: 2025-09-07T00:05:45.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:11:11
    Last run: 2025-08-11T09:29:51.000Z
    Previous status: unknown

Created: 2025-08-22 Last update: 2025-09-13 19:39
Marked for autoremoval on 19 October: #1114298 high
Version 1.85+dfsg-4 of python-biopython is marked for autoremoval from testing on Sun 19 Oct 2025. It is affected by #1114298. The removal of python-biopython will also cause the removal of (transitive) reverse dependencies: ariba, augur, busco, cctbx, changeo, cnvkit, cutesv, dials, elpa-snakemake, gasic, graphlan, gubbins, hinge, idseq-bench, insilicoseq, kallisto, kaptive, kineticstools, kleborate, libobjcryst, mcaller, mdanalysis, metaphlan, mirtop, nanofilt, nanolyse, ncbi-acc-download, objcryst-fox, optimir, parsnp, peptidebuilder, pigx-rnaseq, pizzly, presto, pyensembl, pyfastx, pyobjcryst, python-bcbio-gff, python-cai, python-cgecore, python-cooler, python-datacache, python-dynasor, python-emmet-core, python-gffutils, python-mp-api, python-nanoget, python-pauvre, python-pbcommand, python-pbcore, python-prodigy, python-pyani, python-pyfaidx, python-seqcluster, python-treetime, qcat, qcumber, recan, resfinder, seqmagick, seqsero, smrtanalysis, snakemake, srst2, trinityrnaseq, virulencefinder, xpore, xraylarch, yanagiba. You should try to prevent the removal by fixing these RC bugs.
Created: 2025-09-12 Last update: 2025-09-13 19:35
lintian reports 1 error high
Lintian reports 1 error about this package. You should make the package lintian clean getting rid of them.
Created: 2025-04-12 Last update: 2025-04-12 06:32
Depends on packages which need a new maintainer normal
The packages that python-biopython depends on which need a new maintainer are:
  • w3c-sgml-lib (#739087)
    • Depends: w3c-sgml-lib
Created: 2022-03-06 Last update: 2025-09-13 19:35
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 1.85+dfsg-5, distribution unstable) and new commits in its VCS. You should consider whether it's time to make an upload.
Created: 2025-09-13 Last update: 2025-09-13 18:05
Fails to build during reproducibility testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2025-09-03 Last update: 2025-09-13 16:33
debian/patches: 1 patch to forward upstream low

Among the 7 debian patches available in version 1.85+dfsg-4 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2024-09-14 Last update: 2025-04-12 05:02
news
[rss feed]
  • [2025-04-15] python-biopython 1.85+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2025-04-11] Accepted python-biopython 1.85+dfsg-4 (source) into unstable (Santiago Vila)
  • [2025-04-11] Accepted python-biopython 1.85+dfsg-3 (source) into unstable (Santiago Vila)
  • [2025-02-13] python-biopython 1.85+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-02-06] Accepted python-biopython 1.85+dfsg-2 (source) into unstable (Michael R. Crusoe)
  • [2025-01-29] Accepted python-biopython 1.85+dfsg-1 (source) into unstable (Michael R. Crusoe)
  • [2024-11-02] python-biopython 1.84+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-10-31] Accepted python-biopython 1.84+dfsg-4 (source) into unstable (Étienne Mollier)
  • [2024-10-20] python-biopython 1.84+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2024-10-18] Accepted python-biopython 1.84+dfsg-3 (source) into unstable (Étienne Mollier)
  • [2024-09-25] Accepted python-biopython 1.84+dfsg-2 (source) into unstable (Étienne Mollier)
  • [2024-09-23] Accepted python-biopython 1.84+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2024-09-20] python-biopython 1.83+dfsg1-5 MIGRATED to testing (Debian testing watch)
  • [2024-09-16] Accepted python-biopython 1.84+dfsg-1~0exp1 (source) into experimental (Étienne Mollier)
  • [2024-09-14] Accepted python-biopython 1.83+dfsg1-5 (source) into unstable (Michael R. Crusoe)
  • [2024-09-08] python-biopython 1.83+dfsg1-4 MIGRATED to testing (Debian testing watch)
  • [2024-09-06] Accepted python-biopython 1.83+dfsg1-4 (source) into unstable (Étienne Mollier)
  • [2024-05-25] python-biopython 1.83+dfsg1-3 MIGRATED to testing (Debian testing watch)
  • [2024-05-22] Accepted python-biopython 1.83+dfsg1-3 (source) into unstable (Étienne Mollier)
  • [2024-05-03] python-biopython 1.83+dfsg1-2 MIGRATED to testing (Debian testing watch)
  • [2024-04-17] Accepted python-biopython 1.83+dfsg1-2 (source) into unstable (Andrius Merkys)
  • [2024-03-21] Accepted python-biopython 1.83+dfsg1-1 (source) into unstable (Étienne Mollier)
  • [2024-03-10] Accepted python-biopython 1.83+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2023-12-24] python-biopython 1.81+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2023-12-19] Accepted python-biopython 1.81+dfsg-3 (source) into unstable (Étienne Mollier)
  • [2023-11-14] python-biopython 1.81+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2023-11-11] Accepted python-biopython 1.81+dfsg-2 (source) into unstable (Étienne Mollier)
  • [2023-07-18] python-biopython 1.81+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-07-15] Accepted python-biopython 1.81+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2023-07-13] python-biopython 1.80+dfsg-6 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 2
  • RC: 0
  • I&N: 0
  • M&W: 0
  • F&P: 2
  • patch: 0
links
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  • version: 1.85+dfsg-4

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