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r-bioc-oligo

Preprocessing tools for oligonucleotide arrays

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general
  • source: r-bioc-oligo (main)
  • version: 1.70.0+ds-3
  • maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
  • uploaders: Steffen Moeller [DMD]
  • arch: any
  • std-ver: 4.7.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 1.62.2+ds-1
  • stable: 1.70.0+ds-3
  • unstable: 1.70.0+ds-3
versioned links
  • 1.62.2+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.70.0+ds-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • r-bioc-oligo
action needed
Debci reports failed tests high
  • unstable: pass (log)
    The tests ran in 0:01:52
    Last run: 2025-12-18T00:46:59.000Z
    Previous status: unknown

  • testing: fail (log)
    The tests ran in 0:00:18
    Last run: 2025-11-26T10:02:11.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:01:48
    Last run: 2025-11-08T18:38:10.000Z
    Previous status: unknown

Created: 2025-11-26 Last update: 2026-03-15 14:32
A new upstream version is available: 1.74.0 high
A new upstream version 1.74.0 is available, you should consider packaging it.
Created: 2025-11-27 Last update: 2026-03-15 12:31
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 1.70.0+ds-4, distribution unstable) and new commits in its VCS. You should consider whether it's time to make an upload.
Created: 2026-03-13 Last update: 2026-03-13 10:02
debian/patches: 1 patch to forward upstream low

Among the 2 debian patches available in version 1.70.0+ds-3 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-04-24 23:32
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.3 instead of 4.7.0).
Created: 2025-02-21 Last update: 2025-12-23 20:00
testing migrations
  • excuses:
    • Migrates after: r-bioc-affxparser, r-bioc-affyio, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-oligoclasses, r-bioc-preprocesscore, r-bioc-zlibbioc
    • Migration status for r-bioc-oligo (- to 1.70.0+ds-4): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ r-bioc-oligo unsatisfiable Build-Depends(-Arch) on s390x: architecture-is-little-endian
    • ∙ ∙ Missing build on riscv64
    • ∙ ∙ Missing build on s390x
    • ∙ ∙ Autopkgtest deferred on riscv64: missing arch:riscv64 build
    • ∙ ∙ Autopkgtest deferred on s390x: missing arch:s390x build
    • ∙ ∙ Autopkgtest for r-bioc-oligo: amd64: Test triggered, arm64: Test triggered, ppc64el: Test triggered
    • ∙ ∙ Lintian check waiting for test results - info
    • ∙ ∙ Too young, only 0 of 5 days old
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-affxparser (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-affyio (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-biobase (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-biocgenerics (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-biostrings (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-oligoclasses (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-preprocesscore (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-oligo r-bioc-zlibbioc (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-affxparser (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-affyio (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-biobase (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-biocgenerics (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-biostrings (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-oligoclasses (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-preprocesscore (not considered)
    • ∙ ∙ Depends: r-bioc-oligo r-bioc-zlibbioc (not considered)
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-oligo.html
    • ∙ ∙ Reproducibility check waiting for results on amd64
    • ∙ ∙ Reproducibility check waiting for results on arm64
    • ∙ ∙ Reproduced on armhf
    • ∙ ∙ Reproduced on i386
    • ∙ ∙ Reproducibility check waiting for results on ppc64el
    • Not considered
news
[rss feed]
  • [2026-03-15] Accepted r-bioc-oligo 1.70.0+ds-4 (source) into unstable (Charles Plessy)
  • [2025-11-24] r-bioc-oligo REMOVED from testing (Debian testing watch)
  • [2025-05-04] r-bioc-oligo 1.70.0+ds-3 MIGRATED to testing (Debian testing watch)
  • [2025-04-24] Accepted r-bioc-oligo 1.70.0+ds-3 (source) into unstable (Rebecca N. Palmer) (signed by: Andreas Tille)
  • [2025-01-22] r-bioc-oligo 1.70.0+ds-2 MIGRATED to testing (Debian testing watch)
  • [2025-01-21] r-bioc-oligo REMOVED from testing (Debian testing watch)
  • [2025-01-13] Accepted r-bioc-oligo 1.70.0+ds-2 (source) into unstable (Michael R. Crusoe)
  • [2024-11-29] Accepted r-bioc-oligo 1.70.0+ds-1 (source) into experimental (Michael R. Crusoe)
  • [2024-09-10] r-bioc-oligo 1.68.2+ds-1 MIGRATED to testing (Debian testing watch)
  • [2024-08-18] Accepted r-bioc-oligo 1.68.2+ds-1 (source) into unstable (Michael R. Crusoe)
  • [2024-07-23] Accepted r-bioc-oligo 1.68.2+ds-1~0exp1 (source) into experimental (Michael R. Crusoe)
  • [2024-07-14] Accepted r-bioc-oligo 1.68.2+ds-1~0exp (source) into experimental (Michael R. Crusoe)
  • [2024-06-25] r-bioc-oligo REMOVED from testing (Debian testing watch)
  • [2023-12-17] r-bioc-oligo 1.66.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-11-30] Accepted r-bioc-oligo 1.66.0+ds-1 (source) into unstable (Andreas Tille)
  • [2023-08-19] r-bioc-oligo 1.64.1+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-07-27] Accepted r-bioc-oligo 1.64.1+ds-1 (source) into unstable (Andreas Tille)
  • [2023-07-14] r-bioc-oligo REMOVED from testing (Debian testing watch)
  • [2023-01-26] r-bioc-oligo 1.62.2+ds-1 MIGRATED to testing (Debian testing watch)
  • [2023-01-21] Accepted r-bioc-oligo 1.62.2+ds-1 (source) into unstable (Andreas Tille)
  • [2022-12-24] r-bioc-oligo 1.62.1+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-12-19] Accepted r-bioc-oligo 1.62.1+ds-1 (source) into unstable (Andreas Tille)
  • [2022-12-05] r-bioc-oligo 1.62.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-11-21] Accepted r-bioc-oligo 1.62.0+ds-1 (source) into unstable (Andreas Tille)
  • [2022-05-24] r-bioc-oligo 1.60.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-16] Accepted r-bioc-oligo 1.60.0+ds-1 (source) into unstable (Nilesh Patra)
  • [2021-12-03] r-bioc-oligo 1.58.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-11-25] Accepted r-bioc-oligo 1.58.0+ds-1 (source) into unstable (Andreas Tille)
  • [2021-10-02] r-bioc-oligo 1.56.0+ds-2 MIGRATED to testing (Debian testing watch)
  • [2021-09-07] Accepted r-bioc-oligo 1.56.0+ds-2 (source) into unstable (Andreas Tille)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
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  • version: 1.70.0+ds-3

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