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r-bioc-phyloseq

GNU R handling and analysis of high-throughput microbiome census data

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general

source: r-bioc-phyloseq (main)
version: 1.56.0+dfsg-1
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all
std-ver: 4.7.4
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.34.0+dfsg-1
oldstable: 1.42.0+dfsg-1
stable: 1.50.0+dfsg-2
unstable: 1.56.0+dfsg-1

versioned links

1.34.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.42.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.50.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.56.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-phyloseq

action needed

Debci reports failed tests high

unstable: neutral (log)
The tests ran in 0:00:28
Last run: 2026-05-28T18:09:23.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:27
Last run: 2025-11-27T16:28:47.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:01:50
Last run: 2026-07-17T09:18:34.000Z
Previous status: unknown

Created: 2025-11-27 Last update: 2026-08-12 14:02

11 new commits since last upload, is it time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit d8f1d31f3fee15cb29c09c95956cc69c0c504113
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:24:47 2026 +0200

    Preparing for upload of 1.54.0

commit 6d628ab176ea12e55269210a23bec3390e0907b0
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 16:23:32 2026 +0100

    Set upstream metadata fields: Bug-Database, Repository-Browse.
    
    Changes-By: lintian-brush
    Fixes: lintian: source: upstream-metadata-missing-bug-tracking [debian/upstream/metadata]
    See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html

commit 3b20aab565fd6493e10536cd5be00ec567959e1d
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:23:28 2026 +0200

    Drop 'Rules-Requires-Root: no' from d/control (routine-update)

commit 001c30d14fe6afc82917f758b549fc90481cbd05
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:23:28 2026 +0200

    Restrict to R packages team core architectures (routine-update)

commit 20b60ac4906a0d373f61a6e3a9b45b8757516754
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:23:05 2026 +0200

    Changes made by dh-update-R and cme

commit afe0ef77f94997b34a98c6e18acc48e209645222
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:22:54 2026 +0200

    Changes made by cme

commit 1fbfdb6e2b093196199eccb564f6d91b5d3d85a5
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:22:06 2026 +0200

    Standards-Version: 4.7.4 (routine-update)

commit d31ea550b33b1583ed1d804b73e459151ae96f88
Merge: 63b8f0e f83f6e4
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:22:06 2026 +0200

    Update upstream source from tag 'upstream/1.56.0+dfsg'
    
    Update to upstream version '1.56.0+dfsg'
    with Debian dir 6f0eabe078a519193f16c410e8c8980c655f3dd9

commit f83f6e45db50630d33b91996cc24af1ae4dcd087
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:22:05 2026 +0200

    New upstream version 1.56.0+dfsg

commit 63b8f0ed920e0a3b0882c2cce43b1edae5c99747
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:22:04 2026 +0200

    New upstream version

commit c1721ec9ffdcb9537868c8f99a0ba58bd0c3f702
Author: Steffen Moeller <moeller@debian.org>
Date:   Mon Aug 10 17:21:44 2026 +0200

    Removing build/ from source tree via Files-Excluded

https://salsa.debian.org/api/v4/projects/r-pkg-team%2Fr-bioc-phyloseq API request failed: 401 Unauthorized at /srv/qa.debian.org/data/vcswatch/vcswatch line 410.

Created: 2026-08-10 Last update: 2026-08-10 21:30

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.23. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migrates after: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biomformat, r-bioc-biostrings, r-bioc-multtest
- Migration status for r-bioc-phyloseq (- to 1.56.0+dfsg-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ New but not reproduced on amd64 - info: r-bioc-phyloseq
- ∙ ∙ New but not reproduced on arm64 - info: r-bioc-phyloseq
- ∙ ∙ New but not reproduced on armhf - info: r-bioc-phyloseq
- ∙ ∙ New but not reproduced on i386 - info: r-bioc-phyloseq
- ∙ ∙ Not built on buildd: arch all binaries uploaded by moeller, a new source-only upload is needed to allow migration
- ∙ ∙ Too young, only 1 of 2 days old
- ∙ ∙ Build-Depends(-Arch): r-bioc-phyloseq r-bioc-biobase
- ∙ ∙ Build-Depends(-Arch): r-bioc-phyloseq r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-phyloseq r-bioc-biomformat (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-phyloseq r-bioc-biostrings (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-phyloseq r-bioc-multtest
- ∙ ∙ Depends: r-bioc-phyloseq r-bioc-biobase
- ∙ ∙ Depends: r-bioc-phyloseq r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-phyloseq r-bioc-biomformat (not considered)
- ∙ ∙ Depends: r-bioc-phyloseq r-bioc-biostrings (not considered)
- ∙ ∙ Depends: r-bioc-phyloseq r-bioc-multtest
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-phyloseq.html
- ∙ ∙ Autopkgtest skipped on armhf: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
- ∙ ∙ Autopkgtest for r-bioc-phyloseq/1.56.0+dfsg-1: amd64: Pass, arm64: Pass, ppc64el: Pass
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- Not considered

news

[2026-08-10] Accepted r-bioc-phyloseq 1.56.0+dfsg-1 (source all) into unstable (Steffen Moeller)
[2025-12-26] Accepted r-bioc-phyloseq 1.54.0+dfsg-1 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-phyloseq REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-phyloseq 1.50.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2025-01-12] Accepted r-bioc-phyloseq 1.50.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2025-01-02] r-bioc-phyloseq REMOVED from testing (Debian testing watch)
[2024-11-28] Accepted r-bioc-phyloseq 1.50.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-10-04] r-bioc-phyloseq 1.48.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-08-17] Accepted r-bioc-phyloseq 1.48.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-07-22] Accepted r-bioc-phyloseq 1.48.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-phyloseq 1.48.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-phyloseq REMOVED from testing (Debian testing watch)
[2024-06-25] r-bioc-phyloseq REMOVED from testing (Debian testing watch)
[2023-12-17] r-bioc-phyloseq 1.46.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-11-30] Accepted r-bioc-phyloseq 1.46.0+dfsg-1 (source) into unstable (Andreas Tille)
[2023-08-19] r-bioc-phyloseq 1.44.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-26] Accepted r-bioc-phyloseq 1.44.0+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-phyloseq REMOVED from testing (Debian testing watch)
[2022-12-05] r-bioc-phyloseq 1.42.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-phyloseq 1.42.0+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-phyloseq 1.40.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-15] Accepted r-bioc-phyloseq 1.40.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-phyloseq 1.38.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-11-25] Accepted r-bioc-phyloseq 1.38.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-09-29] r-bioc-phyloseq 1.36.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-09-10] Accepted r-bioc-phyloseq 1.36.0+dfsg-1 (source) into unstable (Andreas Tille)
[2020-11-23] r-bioc-phyloseq 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2020-11-17] Accepted r-bioc-phyloseq 1.34.0+dfsg-1 (source) into unstable (Andreas Tille)
[2020-05-29] r-bioc-phyloseq 1.32.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2020-05-20] Accepted r-bioc-phyloseq 1.32.0+dfsg-1 (source) into unstable (Dylan Aïssi)

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bugs [bug history graph]

all: 0

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version: 1.54.0+dfsg-1

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