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seqkit

cross-platform and ultrafast toolkit for FASTA/Q file manipulation

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general

source: seqkit (main)
version: 2.10.1+ds-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all any
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 0.15.0+ds-2
oldstable: 2.3.1+ds-1
stable: 2.9.0+ds-1
testing: 2.9.0+ds-1
unstable: 2.10.1+ds-1

versioned links

0.15.0+ds-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.3.1+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.9.0+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.10.1+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

seqkit
seqkit-examples

action needed

A new upstream version is available: 2.10.1 high

A new upstream version 2.10.1 is available, you should consider packaging it.

Created: 2025-03-14 Last update: 2025-10-26 16:48

debian/patches: 2 patches to forward upstream low

Among the 3 debian patches available in version 2.9.0+ds-1 of the package, we noticed the following issues:

2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-01-09 20:30

testing migrations

excuses:
- Migrates after: golang-github-shenwei356-bio, golang-github-shenwei356-bwt, golang-github-shenwei356-util
- Migration status for seqkit (2.9.0+ds-1 to 2.10.1+ds-1): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Waiting for piuparts test results (stalls migration) - https://piuparts.debian.org/sid/source/s/seqkit.html
- ∙ ∙ autopkgtest for bioawk: amd64: Test triggered, arm64: Test triggered, i386: Test triggered, ppc64el: Test triggered, riscv64: Test triggered, s390x: Test triggered
- ∙ ∙ autopkgtest for seqkit: amd64: Test triggered, arm64: Test triggered, i386: Test triggered, ppc64el: Test triggered, riscv64: Test triggered, s390x: Test triggered
- ∙ ∙ Waiting for lintian test results (stalls migration) - info
- ∙ ∙ Too young, only 0 of 5 days old
- ∙ ∙ Built-Using: seqkit golang-github-shenwei356-bio
- ∙ ∙ Built-Using: seqkit golang-github-shenwei356-bwt
- ∙ ∙ Built-Using: seqkit golang-github-shenwei356-util
- Additional info:
- ∙ ∙ Waiting for reproducibility test results on amd64 - info ♻
- ∙ ∙ Waiting for reproducibility test results on arm64 - info ♻
- Not considered

news

[2025-10-26] Accepted seqkit 2.10.1+ds-1 (source) into unstable (Nilesh Patra)
[2025-01-12] seqkit 2.9.0+ds-1 MIGRATED to testing (Debian testing watch)
[2025-01-09] Accepted seqkit 2.9.0+ds-1 (source) into unstable (Maytham Alsudany)
[2024-12-02] seqkit 2.8.2+ds-2 MIGRATED to testing (Debian testing watch)
[2024-11-30] Accepted seqkit 2.8.2+ds-2 (source) into unstable (Nilesh Patra)
[2024-07-11] seqkit 2.8.2+ds-1 MIGRATED to testing (Debian testing watch)
[2024-06-30] Accepted seqkit 2.8.2+ds-1 (source) into unstable (Maytham Alsudany)
[2023-12-28] seqkit 2.3.1+ds-2 MIGRATED to testing (Debian testing watch)
[2023-12-25] Accepted seqkit 2.3.1+ds-2 (source) into unstable (Nilesh Patra)
[2022-10-02] seqkit 2.3.1+ds-1 MIGRATED to testing (Debian testing watch)
[2022-09-29] Accepted seqkit 2.3.1+ds-1 (source) into unstable (Andreas Tille)
[2022-08-29] seqkit 2.3.0+ds-1 MIGRATED to testing (Debian testing watch)
[2022-08-25] Accepted seqkit 2.3.0+ds-1 (source) into unstable (Andreas Tille)
[2022-05-31] seqkit 2.2.0+ds-2 MIGRATED to testing (Debian testing watch)
[2022-05-29] Accepted seqkit 2.2.0+ds-2 (source) into unstable (Nilesh Patra)
[2022-05-28] Accepted seqkit 2.2.0+ds-1 (source) into unstable (Nilesh Patra)
[2022-01-18] seqkit 2.1.0+ds-1 MIGRATED to testing (Debian testing watch)
[2022-01-16] Accepted seqkit 2.1.0+ds-1 (source) into unstable (Nilesh Patra)
[2021-10-06] seqkit 2.0.1+ds-2 MIGRATED to testing (Debian testing watch)
[2021-09-27] Accepted seqkit 2.0.1+ds-2 (source) into unstable (Nilesh Patra)
[2021-09-26] Accepted seqkit 2.0.1+ds-1 (source) into unstable (Nilesh Patra)
[2021-09-01] seqkit 2.0.0+ds-1 MIGRATED to testing (Debian testing watch)
[2021-08-29] Accepted seqkit 2.0.0+ds-1 (source) into unstable (Nilesh Patra)
[2021-08-21] seqkit 0.16.1+ds-1 MIGRATED to testing (Debian testing watch)
[2021-08-17] Accepted seqkit 0.16.1+ds-1 (source) into unstable (Nilesh Patra)
[2021-01-30] seqkit 0.15.0+ds-2 MIGRATED to testing (Debian testing watch)
[2021-01-27] Accepted seqkit 0.15.0+ds-2 (source) into unstable (Andreas Tille)
[2021-01-16] seqkit 0.15.0+ds-1 MIGRATED to testing (Debian testing watch)
[2021-01-14] Accepted seqkit 0.15.0+ds-1 (source) into unstable (Nilesh Patra)
[2020-12-04] seqkit 0.14.0+ds-1 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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version: 2.9.0+ds-1

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