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bioperl

Perl tools for computational molecular biology

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general

source: bioperl (main)
version: 1.7.8-3
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Steffen Moeller [DMD] – Olivier Sallou [DMD]
arch: all
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.7.7-2
oldstable: 1.7.8-1
stable: 1.7.8-1
testing: 1.7.8-3
unstable: 1.7.8-3

versioned links

1.7.7-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7.8-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7.8-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bioperl
libbio-perl-perl

action needed

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 1.7.8-4, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit a2376eb9414f1dfab390a2f6dbd324fb456b7989
Author: Michael R. Crusoe <crusoe@debian.org>
Date:   Fri Mar 20 14:53:57 2026 +0100

    d/control: include libbio-alignio-stockholm-perl which was split off

commit 3c9c79e069e121f45b3fe910a3508623d9e6c9cf
Author: Michael R. Crusoe <2153-crusoe@users.noreply.salsa.debian.org>
Date:   Fri Mar 20 13:54:52 2026 +0000

    Update debian/gbp.conf

commit ec3e746eac9488f835395e781b2b8872f191fda8
Author: Charles Plessy <plessy@debian.org>
Date:   Sun Jan 25 16:24:04 2026 +0900

    Remove dependencies on GD as bp_chaos_plot was removed earlier.
    
    Closes: #1126366

Created: 2026-01-16 Last update: 2026-03-20 15:34

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.3 instead of 4.7.2).

Created: 2025-12-23 Last update: 2026-01-25 17:30

news

[2026-01-27] bioperl 1.7.8-3 MIGRATED to testing (Debian testing watch)
[2026-01-25] Accepted bioperl 1.7.8-3 (source) into unstable (Charles Plessy)
[2025-09-06] bioperl 1.7.8-2 MIGRATED to testing (Debian testing watch)
[2025-09-03] Accepted bioperl 1.7.8-2 (source) into unstable (gregor herrmann)
[2021-08-18] bioperl 1.7.8-1 MIGRATED to testing (Debian testing watch)
[2021-08-15] Accepted bioperl 1.7.8-1 (source) into unstable (Nilesh Patra)
[2020-10-31] bioperl 1.7.7-2 MIGRATED to testing (Debian testing watch)
[2020-10-31] bioperl 1.7.7-2 MIGRATED to testing (Debian testing watch)
[2020-10-28] Accepted bioperl 1.7.7-2 (source) into unstable (Steffen Moeller)
[2019-12-17] bioperl 1.7.7-1 MIGRATED to testing (Debian testing watch)
[2019-12-14] Accepted bioperl 1.7.7-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-30] bioperl 1.7.6-3 MIGRATED to testing (Debian testing watch)
[2019-11-28] Accepted bioperl 1.7.6-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-27] Accepted bioperl 1.7.6-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-26] Accepted bioperl 1.7.6-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-07-27] Accepted bioperl 1.7.5-1 (source all) into unstable (Steffen Moeller)
[2019-02-05] Accepted bioperl 1.7.4-1 (source) into unstable (Andreas Tille)
[2018-10-30] bioperl 1.7.2-3 MIGRATED to testing (Debian testing watch)
[2018-10-27] Accepted bioperl 1.7.2-3 (source) into unstable (Andreas Tille)
[2017-12-19] bioperl 1.7.2-2 MIGRATED to testing (Debian testing watch)
[2017-12-13] Accepted bioperl 1.7.2-2 (source) into unstable (gregor herrmann) (signed by: Andreas Tille)
[2017-12-09] bioperl 1.7.2-1 MIGRATED to testing (Debian testing watch)
[2017-12-03] Accepted bioperl 1.7.2-1 (source) into unstable (Andreas Tille)
[2017-09-08] bioperl 1.7.1-3 MIGRATED to testing (Debian testing watch)
[2017-09-02] Accepted bioperl 1.7.1-3 (source) into unstable (Carnë Draug) (signed by: Andreas Tille)
[2017-01-26] bioperl 1.7.1-2 MIGRATED to testing (Debian testing watch)
[2017-01-15] Accepted bioperl 1.7.1-2 (source all) into unstable (Andreas Tille)
[2016-12-16] bioperl 1.7.1-1 MIGRATED to testing (Debian testing watch)
[2016-12-05] Accepted bioperl 1.7.1-1 (source all) into unstable (Andreas Tille)
[2016-07-05] bioperl 1.6.924-5 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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version: 1.7.8-3

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