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kallisto

near-optimal RNA-Seq quantification

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general
  • source: kallisto (main)
  • version: 0.48.0+dfsg-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: all alpha arm64 hppa ia64 mips64el ppc64 ppc64el s390x sparc64
  • std-ver: 4.6.1
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 0.46.2+dfsg-2
  • stable: 0.48.0+dfsg-3
  • testing: 0.48.0+dfsg-4
  • unstable: 0.48.0+dfsg-4
versioned links
  • 0.46.2+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.48.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.48.0+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • kallisto
  • kallisto-examples
action needed
A new upstream version is available: 0.51.1 high
A new upstream version 0.51.1 is available, you should consider packaging it.
Created: 2023-07-01 Last update: 2025-05-28 23:27
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 0.51.1+dfsg-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 84c31f65218466b3a00c0bff495fc1ed5e563935
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:19:34 2024 +0200

    Adapt patches

commit b24bfb4aa561dbd9eb4ce559ca0fd480e85102ee
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:18:55 2024 +0200

    Remove patch Check_busOptions.seq_length_before_accessing.patch that is missing from debian/patches/series.

commit ef34b105fbbd0d5307986975bc250c26d5cf08e2
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 15:10:01 2024 +0000

    Remove duplicate line from changelog.
    
    Changes-By: lintian-brush

commit a437f60a950b1763f8f4e1571e703ea785208aba
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:57 2024 +0200

    Standards-Version: 4.7.0 (routine-update)

commit 5b06a039aa45c3eb25468044fc601c8bacb6564d
Merge: a0ac45c fab07f2
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:57 2024 +0200

    Update upstream source from tag 'upstream/0.51.1+dfsg'
    
    Update to upstream version '0.51.1+dfsg'
    with Debian dir 2ef0c7f320c130718513472579aabb90837032e6

commit a0ac45c5cbefdea30ff46957c3fab4ba3cf5234b
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:54 2024 +0200

    New upstream version

commit fab07f24a5cda4169ead3ff23b32e73141203cfb
Author: Andreas Tille <tille@debian.org>
Date:   Sun Oct 13 17:09:54 2024 +0200

    New upstream version 0.51.1+dfsg

commit 7d125706ac5f607a89e1b3fa6533f9c93b0a0919
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 12:10:13 2024 +0100

    d/rules: need cmake option needed: USE_BAM.

commit 148552cc96c32465412692022f64bcb03e740537
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:57:52 2024 +0100

    bifrost patch adjustments

commit 37dc5ba6a2ae346625f8bd3e4e2c17a3607e0b86
Merge: b15d94a ad903f0
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:45:00 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir 893437f9425ba2b444ea04ad15920378d2d03720

commit ad903f064c3535dbd41d7f2aa1beb136d80ca2b5
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:44:56 2024 +0100

    New upstream version 0.50.1+dfsg

commit b15d94a157791022926b8cf3c86c8a09e25e7bb6
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:44:19 2024 +0100

    exclude generate HTML docs of bifrost

commit 04e967ee8174cb989a994e097a679260938c1f84
Merge: 5c69de5 f1dc2a4
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:42:18 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir e1c4768a2595b84f0df81fcd64bf8e4180f0864b

commit f1dc2a4a0aa68efa1e4010ef5aadb9053acd741d
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:42:14 2024 +0100

    New upstream version 0.50.1+dfsg

commit 5c69de56085ebbcfd3fcace0325cf592d2099abe
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:40:54 2024 +0100

    Upstream has forked bifrost, use their copy instead.

commit 5cd86026997bdebf5c85930aa2156c2598836219
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Wed Mar 27 11:21:35 2024 +0100

    fix changelog

commit 9c2e7089547e88d209ccd52dbb08b33295103e10
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:31:17 2024 +0100

    d/control: fix type in architecture-properties provision name.

commit 4d93878527cea09e204c16f236fe7145123f015d
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:29:13 2024 +0100

    d/rules: change dh_auto_test rule from an override to an execute_after to remove the need to check DEB_BUILD_OPTIONS.

commit 678b7524140cfc68fa0d174981a1aa28037fe225
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Thu Mar 7 12:02:10 2024 +0100

    d/control: simplify architecture specifications by using provisions from the architecture-properties package.

commit 5f0bcfdce8ae35f264d644d4904489679d678f59
Merge: 32ac962 70e6823
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:07:47 2024 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir ec16b6b9a3f466e5b2de859ac29a518134040d31

commit 70e6823b6f7f953582b83037f01218d61f4e7512
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:07:44 2024 +0100

    New upstream version 0.50.1+dfsg

commit 32ac962fbb2796ef848685596adfe0779ed99ce0
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:03:54 2024 +0100

    Exclude code copy of bifrost

commit 287cfb6e5c03535bb6e34ddba1fd293a1ea6864c
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 15:03:26 2024 +0100

    Use Debian packaged bifrost

commit 128458b3f4a6f9bcf761be1a0aeaa1ea091a0e1c
Author: Andreas Tille <tille@debian.org>
Date:   Fri Jan 5 09:23:58 2024 +0100

    libbifrost-dev is now available

commit 77c2ccdd09a745a244df51244593b525db7dcc6e
Author: Andreas Tille <tille@debian.org>
Date:   Fri Dec 1 13:29:15 2023 +0100

    Add new predepends

commit 833130c8eb8985ff40f3728b348bae5882ae75d3
Author: Andreas Tille <tille@debian.org>
Date:   Fri Dec 1 11:56:57 2023 +0100

    Add support for loongarch64 in d/control

commit 5af8a9689ea4e9a1211bbfc97e60f2d56c8f64d4
Author: Andreas Tille <tille@debian.org>
Date:   Thu Nov 9 06:59:36 2023 +0100

    Fix download name

commit 9188c763dacee7e01d5f03291aca106b58cd337d
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 11:43:12 2023 +0100

    Update patches

commit a7059c0afec7578c2438da062b4c41012af81d40
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:25 2023 +0100

    routine-update: Standards-Version: 4.6.2

commit 1ee4a608c6540abbab77126eec0a99e06597835d
Merge: 7205d80 9bdff6c
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:25 2023 +0100

    Update upstream source from tag 'upstream/0.50.1+dfsg'
    
    Update to upstream version '0.50.1+dfsg'
    with Debian dir b74632e6b822b1a732fbdfc2d207d73627c6695e

commit 9bdff6cf9920d4d420d92f3fc75576b144f51913
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:18 2023 +0100

    New upstream version 0.50.1+dfsg

commit 7205d8007d2dd6c8c7d86765e9074c268a7ea169
Author: Andreas Tille <tille@debian.org>
Date:   Wed Nov 8 09:43:17 2023 +0100

    routine-update: New upstream version

commit c507a3e0a1b15eafb8ccb414300945f8d9bd7463
Author: Andreas Tille <tille@debian.org>
Date:   Wed Apr 12 08:34:03 2023 +0200

    Exclude i386 build from salsa ci
Created: 2023-04-12 Last update: 2025-05-27 22:32
lintian reports 1 warning normal
Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.
Created: 2020-09-21 Last update: 2020-09-21 06:02
debian/patches: 4 patches to forward upstream low

Among the 5 debian patches available in version 0.48.0+dfsg-4 of the package, we noticed the following issues:

  • 4 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-04-12 18:34
Build log checks report 1 warning low
Build log checks report 1 warning
Created: 2019-08-05 Last update: 2019-08-05 16:46
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.1).
Created: 2022-12-17 Last update: 2025-02-27 13:25
news
[rss feed]
  • [2024-11-30] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-11-29] kallisto REMOVED from testing (Debian testing watch)
  • [2024-08-10] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-08-01] kallisto REMOVED from testing (Debian testing watch)
  • [2024-03-11] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-03-11] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-03-08] kallisto REMOVED from testing (Debian testing watch)
  • [2024-01-22] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2024-01-21] kallisto REMOVED from testing (Debian testing watch)
  • [2023-06-13] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2023-04-12] Accepted kallisto 0.48.0+dfsg-4 (source) into unstable (Andreas Tille)
  • [2022-11-09] kallisto 0.48.0+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2022-10-06] Accepted kallisto 0.48.0+dfsg-3 (source) into unstable (Andreas Tille)
  • [2022-02-22] kallisto 0.48.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2022-01-20] Accepted kallisto 0.48.0+dfsg-2 (source) into unstable (Andrius Merkys)
  • [2022-01-19] Accepted kallisto 0.48.0+dfsg-1 (source) into unstable (Andrius Merkys)
  • [2021-08-16] kallisto 0.46.2+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2021-03-04] Accepted kallisto 0.46.2+dfsg-3 (source) into unstable (Nilesh Patra)
  • [2020-05-18] kallisto 0.46.2+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2020-05-16] Accepted kallisto 0.46.2+dfsg-2 (source) into unstable (Pranav Ballaney) (signed by: Andreas Tille)
  • [2020-05-15] Accepted kallisto 0.46.2+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2020-01-10] kallisto 0.46.1+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2019-12-27] Accepted kallisto 0.46.1+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Andrius Merkys)
  • [2019-11-11] kallisto 0.46.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-11-08] Accepted kallisto 0.46.1+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2019-08-10] kallisto 0.46.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-08-07] Accepted kallisto 0.46.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2019-08-05] Accepted kallisto 0.45.1+dfsg-1 (source amd64 all) into unstable, unstable (Andreas Tille)
bugs [bug history graph]
  • all: 2
  • RC: 0
  • I&N: 0
  • M&W: 1
  • F&P: 1
  • patch: 0
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  • version: 0.48.0+dfsg-4build1

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