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kallisto

near-optimal RNA-Seq quantification

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general

source: kallisto (main)
version: 0.51.1+dfsg-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all any
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 0.46.2+dfsg-2
oldstable: 0.48.0+dfsg-3
stable: 0.48.0+dfsg-4
unstable: 0.51.1+dfsg-1

versioned links

0.46.2+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
0.48.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
0.48.0+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
0.51.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

kallisto
kallisto-examples

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:00:23
Last run: 2025-12-18T06:42:42.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:19
Last run: 2025-11-26T00:47:31.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:00:30
Last run: 2025-11-10T05:36:42.000Z
Previous status: unknown

Created: 2025-11-26 Last update: 2026-02-24 23:31

lintian reports 1 warning normal

Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.

Created: 2020-09-21 Last update: 2020-09-21 06:02

debian/patches: 8 patches to forward upstream low

Among the 9 debian patches available in version 0.51.1+dfsg-1 of the package, we noticed the following issues:

8 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-02-23 11:47

testing migrations

excuses:
- Migrates after: snakemake
- Migration status for kallisto (- to 0.51.1+dfsg-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Updating kallisto would introduce bugs in testing: #1118526
- ∙ ∙ Missing build on ppc64el
- ∙ ∙ Missing build on riscv64
- ∙ ∙ Autopkgtest deferred on ppc64el: missing arch:ppc64el build
- ∙ ∙ Autopkgtest deferred on riscv64: missing arch:riscv64 build
- ∙ ∙ Autopkgtest for kallisto/0.51.1+dfsg-1: amd64: Pass, arm64: Pass, s390x: Pass
- ∙ ∙ Lintian check waiting for test results on riscv64, ppc64el - info
- ∙ ∙ Reproducibility check deferred on ppc64el: missing builds
- ∙ ∙ Too young, only 2 of 5 days old
- ∙ ∙ Build-Depends(-Arch): kallisto snakemake
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/k/kallisto.html
- ∙ ∙ New but not reproducible on amd64: kallisto
- ∙ ∙ Reproducible on arm64
- ∙ ∙ Reproducible on armhf
- ∙ ∙ Reproducible on i386
- Not considered

news

[2026-02-22] Accepted kallisto 0.51.1+dfsg-1 (source) into unstable (Andreas Tille)
[2025-11-26] kallisto REMOVED from testing (Debian testing watch)
[2024-11-30] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-11-29] kallisto REMOVED from testing (Debian testing watch)
[2024-08-10] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-08-01] kallisto REMOVED from testing (Debian testing watch)
[2024-03-11] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-03-11] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-03-08] kallisto REMOVED from testing (Debian testing watch)
[2024-01-22] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2024-01-21] kallisto REMOVED from testing (Debian testing watch)
[2023-06-13] kallisto 0.48.0+dfsg-4 MIGRATED to testing (Debian testing watch)
[2023-04-12] Accepted kallisto 0.48.0+dfsg-4 (source) into unstable (Andreas Tille)
[2022-11-09] kallisto 0.48.0+dfsg-3 MIGRATED to testing (Debian testing watch)
[2022-10-06] Accepted kallisto 0.48.0+dfsg-3 (source) into unstable (Andreas Tille)
[2022-02-22] kallisto 0.48.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2022-01-20] Accepted kallisto 0.48.0+dfsg-2 (source) into unstable (Andrius Merkys)
[2022-01-19] Accepted kallisto 0.48.0+dfsg-1 (source) into unstable (Andrius Merkys)
[2021-08-16] kallisto 0.46.2+dfsg-3 MIGRATED to testing (Debian testing watch)
[2021-03-04] Accepted kallisto 0.46.2+dfsg-3 (source) into unstable (Nilesh Patra)
[2020-05-18] kallisto 0.46.2+dfsg-2 MIGRATED to testing (Debian testing watch)
[2020-05-16] Accepted kallisto 0.46.2+dfsg-2 (source) into unstable (Pranav Ballaney) (signed by: Andreas Tille)
[2020-05-15] Accepted kallisto 0.46.2+dfsg-1 (source) into unstable (Steffen Moeller)
[2020-01-10] kallisto 0.46.1+dfsg-2 MIGRATED to testing (Debian testing watch)
[2019-12-27] Accepted kallisto 0.46.1+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Andrius Merkys)
[2019-11-11] kallisto 0.46.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2019-11-08] Accepted kallisto 0.46.1+dfsg-1 (source) into unstable (Steffen Moeller)
[2019-08-10] kallisto 0.46.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2019-08-07] Accepted kallisto 0.46.0+dfsg-1 (source) into unstable (Andreas Tille)
[2019-08-05] Accepted kallisto 0.45.1+dfsg-1 (source amd64 all) into unstable, unstable (Andreas Tille)

1
2

bugs [bug history graph]

all: 2
RC: 2
I&N: 0
M&W: 0
F&P: 0
patch: 0

links

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ubuntu

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version: 0.48.0+dfsg-4build2

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