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kallisto

near-optimal RNA-Seq quantification

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general
  • source: kallisto (main)
  • version: 0.48.0+dfsg-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: all alpha arm64 hppa ia64 mips64el ppc64 ppc64el s390x sparc64
  • std-ver: 4.6.1
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • stable: 0.46.2+dfsg-2
  • testing: 0.48.0+dfsg-3
  • unstable: 0.48.0+dfsg-4
versioned links
  • 0.46.2+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.48.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 0.48.0+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • kallisto
  • kallisto-examples
action needed
Marked for autoremoval on 16 June due to r-cran-shiny: #1035428 high
Version 0.48.0+dfsg-3 of kallisto is marked for autoremoval from testing on Fri 16 Jun 2023. It depends (transitively) on r-cran-shiny, affected by #1035428. You should try to prevent the removal by fixing these RC bugs.
Created: 2023-05-10 Last update: 2023-05-17 09:05
1 new commit since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit c507a3e0a1b15eafb8ccb414300945f8d9bd7463
Author: Andreas Tille <tille@debian.org>
Date:   Wed Apr 12 08:34:03 2023 +0200

    Exclude i386 build from salsa ci
Created: 2023-04-12 Last update: 2023-05-17 10:29
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 20-day delay is over. Check why.
Created: 2023-05-02 Last update: 2023-05-17 09:05
Does not build reproducibly during testing normal
A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!
Created: 2022-11-09 Last update: 2023-05-17 08:00
lintian reports 1 warning normal
Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.
Created: 2020-09-21 Last update: 2020-09-21 06:02
debian/patches: 4 patches to forward upstream low

Among the 5 debian patches available in version 0.48.0+dfsg-4 of the package, we noticed the following issues:

  • 4 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-04-12 18:34
Build log checks report 1 warning low
Build log checks report 1 warning
Created: 2019-08-05 Last update: 2019-08-05 16:46
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.6.2 instead of 4.6.1).
Created: 2022-12-17 Last update: 2023-04-12 14:09
testing migrations
  • excuses:
    • Migration status for kallisto (0.48.0+dfsg-3 to 0.48.0+dfsg-4): BLOCKED: Needs an approval (either due to a freeze, the source suite or a manual hint)
    • Issues preventing migration:
    • ∙ ∙ blocked by freeze: autopkgtest not fully successful (Follow the freeze policy when applying for an unblock)
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/k/kallisto.html
    • ∙ ∙ autopkgtest for kallisto/0.48.0+dfsg-4: amd64: Pass, arm64: Pass, armel: Failed (not a regression), armhf: Failed (not a regression), i386: Failed (not a regression), ppc64el: Pass, s390x: Pass
    • ∙ ∙ 35 days old (needed 20 days)
    • Not considered
news
[rss feed]
  • [2023-04-12] Accepted kallisto 0.48.0+dfsg-4 (source) into unstable (Andreas Tille)
  • [2022-11-09] kallisto 0.48.0+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2022-10-06] Accepted kallisto 0.48.0+dfsg-3 (source) into unstable (Andreas Tille)
  • [2022-02-22] kallisto 0.48.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2022-01-20] Accepted kallisto 0.48.0+dfsg-2 (source) into unstable (Andrius Merkys)
  • [2022-01-19] Accepted kallisto 0.48.0+dfsg-1 (source) into unstable (Andrius Merkys)
  • [2021-08-16] kallisto 0.46.2+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2021-03-04] Accepted kallisto 0.46.2+dfsg-3 (source) into unstable (Nilesh Patra)
  • [2020-05-18] kallisto 0.46.2+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2020-05-16] Accepted kallisto 0.46.2+dfsg-2 (source) into unstable (Pranav Ballaney) (signed by: Andreas Tille)
  • [2020-05-15] Accepted kallisto 0.46.2+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2020-01-10] kallisto 0.46.1+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2019-12-27] Accepted kallisto 0.46.1+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Andrius Merkys)
  • [2019-11-11] kallisto 0.46.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-11-08] Accepted kallisto 0.46.1+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2019-08-10] kallisto 0.46.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-08-07] Accepted kallisto 0.46.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2019-08-05] Accepted kallisto 0.45.1+dfsg-1 (source amd64 all) into unstable, unstable (Andreas Tille)
bugs [bug history graph]
  • all: 0
links
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  • version: 0.48.0+dfsg-4

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