ncbi-tools6 - Debian Package Tracker

general

source: ncbi-tools6 (main)
version: 6.1.20170106+dfsg2-7
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Aaron M. Ucko [DMD]
arch: all any
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 6.1.20170106+dfsg1-9
oldstable: 6.1.20170106+dfsg1-10
stable: 6.1.20170106+dfsg2-6
testing: 6.1.20170106+dfsg2-6
unstable: 6.1.20170106+dfsg2-7

versioned links

6.1.20170106+dfsg1-9: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
6.1.20170106+dfsg1-10: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
6.1.20170106+dfsg2-6: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
6.1.20170106+dfsg2-7: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

libncbi6-dev
libncbi6t64
libvibrant6-dev
libvibrant6t64
ncbi-cn3d
ncbi-data
ncbi-rrna-data
ncbi-tools-bin (1 bugs: 0, 0, 1, 0)
ncbi-tools-x11 (1 bugs: 0, 0, 1, 0)

action needed

Debci reports failed tests high

unstable: fail (log)
The tests ran in 0:01:15
Last run: 2025-12-17T21:27:43.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:01:07
Last run: 2025-12-25T05:39:01.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:04:22
Last run: 2025-11-09T07:32:45.000Z
Previous status: unknown

Created: 2025-12-17 Last update: 2025-12-29 20:34

Marked for autoremoval on 30 January: #1123553 high

Version 6.1.20170106+dfsg2-6 of ncbi-tools6 is marked for autoremoval from testing on Fri 30 Jan 2026. It is affected by #1123553. The removal of ncbi-tools6 will also cause the removal of (transitive) reverse dependencies: ariba, augur, bioperl-run, brig, busco, cct, changeo, cutesv, elpa-snakemake, gasic, graphlan, gubbins, idseq-bench, insilicoseq, kaptive, kleborate, kraken2, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, macsyfinder, mcaller, mdanalysis, metaphlan, metastudent, metastudent-data, microbiomeutil, mirtop, nanofilt, nanolyse, nanostat, ncbi-acc-download, ncbi-blast+, njplot, optimir, pairtools, parsnp, peptidebuilder, placnet, plasmidid, presto, prokka, proteinortho, provean, psortb, pyensembl, pyfastx, python-bcbio-gff, python-bioframe, python-biopython, python-biotools, python-cai, python-cgecore, python-cooler, python-datacache, python-gffutils, python-nanoget, python-pauvre, python-prodigy, python-pyani, python-pyfaidx, python-seqcluster, python-treetime, qcat, readseq, readucks, recan, resfinder, roary, ruby-crb-blast, seqmagick, seqsero, shasta, snakemake, sprai, srst2, unicycler, virulencefinder, xpore, yanagiba. You should try to prevent the removal by fixing these RC bugs.

Created: 2025-12-24 Last update: 2025-12-29 20:33

AppStream hints: 6 errors and 6 warnings high

AppStream found metadata issues for packages:

ncbi-cn3d: 1 error and 1 warning
ncbi-tools-x11: 5 errors and 5 warnings

You should get rid of them to provide more metadata about this software.

Created: 2018-06-04 Last update: 2022-01-21 06:05

lintian reports 1 warning normal

Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.

Created: 2025-12-29 Last update: 2025-12-29 16:01

5 new commits since last upload, is it time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit f9dc7296833a033b3afe029f1d780c02487a0445
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Dec 28 22:30:14 2025 -0500

    Finalize ncbi-tools6 6.1.20170106+dfsg2-7 for unstable.

commit f69725a804c8ca5623c81e4f62beb99d90492a20
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Dec 28 22:26:53 2025 -0500

    Standards-Version: 4.7.3 (routine-update)

commit 9f6e8426feba25ebbeb99030ddced1b1e5256f2e
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Dec 28 22:24:32 2025 -0500

    debian/.ncbirc: [BLAST]BLASTDB=/usr/share/ncbi/data (see #1117994).

commit a903b9946d0ac73a8e4c3d9906a39ac2cf359006
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Dec 28 22:01:10 2025 -0500

    Always return a value from non-void functions (#1123553).
    
    * biostruc/cdd/thrd*.[ch] (bwfi, cp[alr]l, cxei, salu, sgoi, slou,
      spe[al], spni, ttb0, zsc): Correct return type to void to match
      implementation and usage.
    * demo/debruijn.c ([Nlm_]Main): Return 0 when not bailing.
    * tools/taxblast.c (RDTaxLookupReset): Return tax_looxup, modified
      in place.

commit 493cb13f33fc379d008e498f6e7cd07c00cf37d5
Author: Aaron M. Ucko <ucko@debian.org>
Date:   Sun Dec 28 21:11:40 2025 -0500

    Start work on ncbi-tools6 6.1.20170106+dfsg2-7.

Created: 2025-12-29 Last update: 2025-12-29 10:03

debian/patches: 1 patch to forward upstream low

Among the 1 debian patch available in version 6.1.20170106+dfsg2-7 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-12-29 12:30

testing migrations

excuses:
- Migration status for ncbi-tools6 (6.1.20170106+dfsg2-6 to 6.1.20170106+dfsg2-7): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Autopkgtest for ncbi-blast+/2.17.0+ds-6: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Test triggered, s390x: Pass
- ∙ ∙ Autopkgtest for ncbi-tools6/6.1.20170106+dfsg2-7: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Test triggered, s390x: Pass
- ∙ ∙ Autopkgtest for njplot/2.4-9: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Test triggered, s390x: Pass
- ∙ ∙ Autopkgtest for prokka/1.14.6+dfsg-6: amd64: Pass, arm64: Pass, i386: Failed (not a regression) ♻ (reference ♻), ppc64el: No tests, superficial or marked flaky ♻, riscv64: Test triggered, s390x: No tests, superficial or marked flaky ♻
- ∙ ∙ Autopkgtest for readseq/1-16: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Test triggered, s390x: Pass
- ∙ ∙ Too young, only 1 of 5 days old
- Additional info (not blocking):
- ∙ ∙ Updating ncbi-tools6 will fix bugs in testing: #1123553
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/n/ncbi-tools6.html
- ∙ ∙ Reproducible on amd64 - info ♻
- ∙ ∙ Waiting for reproducibility test results on arm64 - info ♻
- Not considered

news

[rss feed]

[2025-12-29] Accepted ncbi-tools6 6.1.20170106+dfsg2-7 (source) into unstable (Aaron M. Ucko)
[2025-06-16] ncbi-tools6 6.1.20170106+dfsg2-6 MIGRATED to testing (Debian testing watch)
[2025-05-26] Accepted ncbi-tools6 6.1.20170106+dfsg2-6 (source) into unstable (Aaron M. Ucko)
[2024-11-12] ncbi-tools6 6.1.20170106+dfsg2-5 MIGRATED to testing (Debian testing watch)
[2024-11-07] Accepted ncbi-tools6 6.1.20170106+dfsg2-5 (source) into unstable (Aaron M. Ucko)
[2024-09-14] ncbi-tools6 6.1.20170106+dfsg2-4 MIGRATED to testing (Debian testing watch)
[2024-09-09] Accepted ncbi-tools6 6.1.20170106+dfsg2-4 (source) into unstable (Aaron M. Ucko)
[2024-07-30] ncbi-tools6 6.1.20170106+dfsg2-3 MIGRATED to testing (Debian testing watch)
[2024-07-25] Accepted ncbi-tools6 6.1.20170106+dfsg2-3 (source) into unstable (Aaron M. Ucko)
[2024-05-03] ncbi-tools6 6.1.20170106+dfsg2-2 MIGRATED to testing (Debian testing watch)
[2024-03-20] Accepted ncbi-tools6 6.1.20170106+dfsg2-2 (source) into unstable (Aaron M. Ucko)
[2024-03-01] Accepted ncbi-tools6 6.1.20170106+dfsg2-1 (source) into unstable (Aaron M. Ucko)
[2024-03-01] Accepted ncbi-tools6 6.1.20170106+dfsg1-10.1 (source) into unstable (Steve Langasek)
[2024-02-27] Accepted ncbi-tools6 6.1.20170106+dfsg2-1~exp2 (source) into experimental (Aaron M. Ucko)
[2024-02-19] Accepted ncbi-tools6 6.1.20170106+dfsg2-1~exp1 (source) into experimental (Aaron M. Ucko)
[2024-02-18] Accepted ncbi-tools6 6.1.20170106+dfsg1-10.1~exp2 (source) into experimental (Steve Langasek)
[2024-02-18] Accepted ncbi-tools6 6.1.20170106+dfsg1-10.1~exp1 (source) into experimental (Steve Langasek)
[2022-09-08] ncbi-tools6 6.1.20170106+dfsg1-10 MIGRATED to testing (Debian testing watch)
[2022-09-04] Accepted ncbi-tools6 6.1.20170106+dfsg1-10 (source) into unstable (Aaron M. Ucko)
[2020-10-15] ncbi-tools6 6.1.20170106+dfsg1-9 MIGRATED to testing (Debian testing watch)
[2020-10-13] Accepted ncbi-tools6 6.1.20170106+dfsg1-9 (source) into unstable (Aaron M. Ucko)
[2020-02-19] ncbi-tools6 6.1.20170106+dfsg1-8 MIGRATED to testing (Debian testing watch)
[2020-02-17] Accepted ncbi-tools6 6.1.20170106+dfsg1-8 (source) into unstable (Aaron M. Ucko)
[2019-09-17] ncbi-tools6 6.1.20170106+dfsg1-7 MIGRATED to testing (Debian testing watch)
[2019-09-15] Accepted ncbi-tools6 6.1.20170106+dfsg1-7 (source) into unstable (Aaron M. Ucko)
[2019-09-13] Accepted ncbi-tools6 6.1.20170106+dfsg1-6 (source) into unstable (Aaron M. Ucko)
[2019-09-11] Accepted ncbi-tools6 6.1.20170106+dfsg1-5 (all amd64 source) into experimental, experimental (Aaron M. Ucko)
[2019-08-29] ncbi-tools6 6.1.20170106+dfsg1-4 MIGRATED to testing (Debian testing watch)
[2019-08-27] Accepted ncbi-tools6 6.1.20170106+dfsg1-0+deb10u2 (source) into proposed-updates->stable-new, proposed-updates (Aaron M. Ucko)
[2019-08-27] Accepted ncbi-tools6 6.1.20170106+dfsg1-4 (source) into unstable (Aaron M. Ucko)

bugs [bug history graph]

all: 2
RC: 0
I&N: 0
M&W: 2
F&P: 0
patch: 0

links

homepage
lintian (0, 1)
buildd: logs, reproducibility, cross
popcon
browse source code
edit tags
other distros
security tracker
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 6.1.20170106+dfsg2-6
2 bugs