-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 21 Sep 2026 13:33:58 +0200 Source: cufflinks Architecture: source Version: 2.2.1+git20190706.dc3b0cb+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Closes: 1114084 1127186 Changes: cufflinks (2.2.1+git20190706.dc3b0cb+dfsg-1) unstable; urgency=medium . * New upstream version (latest commit) * Build with gcc-15 - Force -std=gnu11 when compiling the legacy locfit C code so that old-style "extern f();" declarations keep their pre-C23 meaning of "unspecified arguments" instead of "no arguments" - gcc15.patch: fix broken function signatures (prresp, compbandwid, wdexpand, compsda, widthsj, kdecri, ar_setfunction, extern INT fact[]) - cxxstandard.patch: force -std=gnu++17 instead of upstream's -std=c++03 (C++03 no longer works with GCC 16's libstdc++, Boost 1.90 and Eigen 5, while the compiler default C++23 breaks the bundled LEMON library which still uses std::allocator::construct/destroy) - byte.patch: use uint8_t instead of the bare 'byte' type (collides with std::byte under C++17) in gff.cpp, codons.cpp and gdna.cpp Closes: #1114084 * d/watch: - version=5 - Fetch latest Git commit * Do not Build-Depend libboost-system-dev + d/rules: exclude boost-system Closes: #1127186 * Build-Depends: - libboost-filesystem-dev - s/dh-python/dh-sequence-python3/ * Fix doc installation * Reformat the Last-Update date as ISO YYYY-MM-DD. * Remove redundant Priority: optional from source stanza. * Update standards version to 4.7.4, no changes needed. * Reflow Uploaders field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * debputy lint --auto-fix (routine-update) * Add autopkgtest Checksums-Sha1: a1b1ebdcf7bfa7842464f0a57bc870543d6d1866 2415 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.dsc e357c2b02deeab3d3296c40845fabecd697263ee 480884 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg.orig.tar.xz 28e0ba5273427736cfc6125cb14a4fa227a7d056 31676 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.debian.tar.xz 86085abd1a6937e751f30c350a286b50c4389ad1 7818 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1_amd64.buildinfo Checksums-Sha256: 4fae0087b3a9e179777c89fc50dcbd5d0d10f5641729705fb3dd331f327a98b7 2415 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.dsc d90f7286f79a20d942ddb59f67f5a516ae9a48b673cb9442c1aa135b954161ea 480884 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg.orig.tar.xz acf038ef51af05c8cd11f6017c828ab0bf6d5eb2a617f4071b01d4e0f71ca055 31676 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.debian.tar.xz 1eed7f83cc53623d7eabf988e48944ab69df964ce2e820d3b767f88277445822 7818 cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1_amd64.buildinfo Files: 3ffdf62db9937e9367e9766e61185ca0 2415 non-free/science optional cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.dsc 0a567f914ca5bd4409f0b1a1077ef69a 480884 non-free/science optional cufflinks_2.2.1+git20190706.dc3b0cb+dfsg.orig.tar.xz 2a9fff904eca76d96587852d65e091e3 31676 non-free/science optional cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1.debian.tar.xz 8f3dad9a20e98fba3f43de51d688b198 7818 non-free/science optional cufflinks_2.2.1+git20190706.dc3b0cb+dfsg-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmqxGUkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGf7A/7BrZTJoO7q+d/wxHXeEWCpjox4j/MvBl/ 3WafNCXjP+LR2FcaAxrP6gIi+jco0AitPmITGNbSl11EeVn3LrCgxxrM90ZYdNkI g8Krq8PIAJO0jbUxm6qA7Y14fLHEQmHu53RSOgMJCXxY2HWaq3h8tU0Ny6KThxBE NHxhOoYV/g1xWDCIQc+73fcCGW5J6sRzfHslf+TcAGFV3kD8Audz6OUQiTarqzzV 7xBJTUN34W1sF7qHgf9ArzPtkb0PdsIJ7yR6i+1vzdSM/cqbshh533dCED5ACMIb WuPbxr+61TNAOmIxyOhSVEn0fzqZr4aNn/8QYYHQQ1HvuYwI6OvXmOIPWdyCGLBA 29pRc0i2srh6AkNJW572Gfps5thM7bHCs64Bu6dXgpocElLQDWMUB+xaxlr+AqST z9ShfUxiiakNN8x7llOpdurawTBEfdlSKdtlZ+w+W9uG0+s0Y8u8uLaGN/Pp8VFD nh9kSBHAq03W6uuKVGxP241XDLnUtnmBDC7ie1icV9G4zQFMPC6ZtaECgOUR5ST1 RSaLywKPUcTh54kS5zMVUiuIHHHGJhb23ypZ2KAlWNz6tuP95CtdoKmMAVjmBQap NqMB3LR5iT77XtYHUvKP5k1EMYny1ePZRg6gCtSoR21yMwkrr8uKDtnd2foV1CXN cuxs22nf+Yc= =ucFZ -----END PGP SIGNATURE-----
