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cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

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general
  • source: cufflinks (non-free)
  • version: 2.2.1+dfsg.1-10
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Alexandre Mestiashvili [DMD] – Charles Plessy [DMD]
  • arch: any
  • std-ver: 4.7.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.2.1+dfsg.1-8
  • oldstable: 2.2.1+dfsg.1-9
  • stable: 2.2.1+dfsg.1-10
  • unstable: 2.2.1+dfsg.1-10
versioned links
  • 2.2.1+dfsg.1-8: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.2.1+dfsg.1-9: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.2.1+dfsg.1-10: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • cufflinks
action needed
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2025-10-05 Last update: 2025-10-06 06:00
debian/patches: 13 patches to forward upstream low

Among the 13 debian patches available in version 2.2.1+dfsg.1-10 of the package, we noticed the following issues:

  • 13 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2024-08-28 10:40
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.7.0).
Created: 2025-02-21 Last update: 2025-02-27 13:25
testing migrations
  • excuses:
    • Migration status for cufflinks (- to 2.2.1+dfsg.1-10): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Removal request by auto-removals
    • ∙ ∙ Trying to remove package, not update it
    • ∙ ∙ Updating cufflinks would introduce bugs in testing: #1114084
    • Additional info:
    • ∙ ∙ Cannot be tested by piuparts (not a blocker) - (no link yet)
    • ∙ ∙ 404 days old (needed 5 days)
    • ∙ ∙ Remove hint for (transitive) dependency: cufflinks
    • Not considered
news
[rss feed]
  • [2025-10-06] cufflinks REMOVED from testing (Debian testing watch)
  • [2024-09-02] cufflinks 2.2.1+dfsg.1-10 MIGRATED to testing (Debian testing watch)
  • [2024-08-27] Accepted cufflinks 2.2.1+dfsg.1-10 (source) into unstable (Étienne Mollier)
  • [2021-11-13] cufflinks 2.2.1+dfsg.1-9 MIGRATED to testing (Debian testing watch)
  • [2021-11-08] Accepted cufflinks 2.2.1+dfsg.1-9 (source) into unstable (Andreas Tille)
  • [2020-08-07] cufflinks 2.2.1+dfsg.1-8 MIGRATED to testing (Debian testing watch)
  • [2020-08-02] Accepted cufflinks 2.2.1+dfsg.1-8 (source amd64) into unstable (Andreas Tille)
  • [2020-02-27] cufflinks 2.2.1+dfsg.1-7 MIGRATED to testing (Debian testing watch)
  • [2020-02-21] Accepted cufflinks 2.2.1+dfsg.1-7 (source) into unstable (Gianfranco Costamagna)
  • [2020-02-21] Accepted cufflinks 2.2.1+dfsg.1-6 (source) into unstable (Gianfranco Costamagna)
  • [2020-02-16] cufflinks 2.2.1+dfsg.1-5 MIGRATED to testing (Debian testing watch)
  • [2020-02-08] Accepted cufflinks 2.2.1+dfsg.1-5 (source) into unstable (Alexandre Mestiashvili)
  • [2019-08-26] cufflinks 2.2.1+dfsg.1-4 MIGRATED to testing (Debian testing watch)
  • [2019-08-20] Accepted cufflinks 2.2.1+dfsg.1-4 (source) into unstable (Alexandre Mestiashvili)
  • [2018-10-25] cufflinks 2.2.1+dfsg.1-3 MIGRATED to testing (Debian testing watch)
  • [2018-10-18] Accepted cufflinks 2.2.1+dfsg.1-3 (source) into unstable (Andreas Tille)
  • [2017-11-07] cufflinks 2.2.1+dfsg.1-2 MIGRATED to testing (Debian testing watch)
  • [2017-11-02] Accepted cufflinks 2.2.1+dfsg.1-2 (source amd64) into unstable (Alexandre Mestiashvili)
  • [2017-09-11] cufflinks 2.2.1+dfsg.1-1 MIGRATED to testing (Debian testing watch)
  • [2017-09-05] Accepted cufflinks 2.2.1+dfsg.1-1 (source amd64) into unstable (Alexandre Mestiashvili)
  • [2016-08-22] cufflinks 2.2.1-3 MIGRATED to testing (Debian testing watch)
  • [2016-08-16] Accepted cufflinks 2.2.1-3 (source amd64) into unstable (Andreas Tille)
  • [2016-07-18] cufflinks 2.2.1-2 MIGRATED to testing (Debian testing watch)
  • [2016-07-12] Accepted cufflinks 2.2.1-2 (source amd64) into unstable (Andreas Tille)
  • [2015-09-29] cufflinks REMOVED from testing (Britney)
  • [2014-05-22] cufflinks 2.2.1-1 MIGRATED to testing (Debian testing watch)
  • [2014-05-16] Accepted cufflinks 2.2.1-1 (source amd64) (Alexandre Mestiashvili)
  • [2014-04-17] cufflinks 2.2.0-1 MIGRATED to testing (Debian testing watch)
  • [2014-04-11] Accepted cufflinks 2.2.0-1 (source amd64) (Alexandre Mestiashvili)
  • [2013-11-18] cufflinks 2.1.1-4 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 2
  • RC: 1
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
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  • version: 2.2.1+dfsg.1-10

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