-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 08 Nov 2026 10:34:51 +0100 Source: vg Architecture: source Version: 1.78.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Closes: 976511 987184 1015699 1089275 1113618 1147107 Changes: vg (1.78.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #1089275, #1113618, #1147107 * d/watch: version=5 * Standards-Version: 4.7.4 (routine-update) * Reflow Uploaders field (cme) * Remove Priority field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * Replace FSF postal address with a reference to https://www.gnu.org/licenses/. * debputy lint --auto-fix (routine-update) * Link against the Debian-packaged GSSW, SSW, GBWT, GBWTGraph, GCSA2, KFF and WFA2 libraries instead of building the bundled copies. * Link against the Debian-packaged libhandlegraph, libbdsg, libvgio, libsdsl, libstructures and libtabixpp instead of building the bundled copies. Closes: #976511 * Use the Debian-packaged libxg and its installed headers. * Use the Debian-packaged sonLib. * Use the Debian-packaged pinchesAndCacti and its installed headers. * Use the Debian-packaged cairo and pixman. * Use the Debian-packaged header-only helper libraries (atomic-queue, BBHash, ips4o, mio, mmmulti, sparsepp and xxsds-dynamic). * Use the Debian-packaged GFAz * Use the Debian-packaged libcpp-progress-bar * Link the static libquicktree to satisfy the TreeREP symbols that Debian's libsonlib leaves unresolved (neighbour_joining_buildtree and friends), used by vg's tree code. (FIXME!) * Build micro-libraries (sha1 and lru_cache) from debian/missing-sources. * Do not force -msse4.1 on every SIMD variant * debian/tests/control: Exclude the snarl distance index test cases that still expect the pre-interface-change libbdsg behaviour * Update lintian-overrides * d/copyright: Completely remove deps dir * Add myself to debian/ dir copyright * debian/tests/control: Replace skip-not-installable by Architecture: amd64 arm64 * Drop bsdmainutils from ored Build-Depends * d/salsa-ci.yml: Do not build on i386 * debian/tests: Test every installed SIMD variant Closes: #987184 * Explicitly disable LTO: vg does not build with link time optimization enabled. Closes: #1015699 Checksums-Sha1: 0ef99364a2e9bb1e3b8d3352284f599129669151 3551 vg_1.78.0+ds-1.dsc 8f95cd7c962be877358c3f6fd953f9626c3b0da0 24740144 vg_1.78.0+ds.orig.tar.xz 6b85351d08477e347c55dc2978510d8de74e5413 49256 vg_1.78.0+ds-1.debian.tar.xz 1e566c3ab48dea4922f6049a218fd2c4c5ceff2c 17358 vg_1.78.0+ds-1_amd64.buildinfo Checksums-Sha256: 3a36a59896979e6dd9f9910f35916c03bb87c486c996c11b9289cfb2d826c76e 3551 vg_1.78.0+ds-1.dsc 794e799fa65a8f81a92b765c3a42e78a780fbc9e0f6300839622dcbff4346e7a 24740144 vg_1.78.0+ds.orig.tar.xz 4c8b5ccfa36f0d56fd0c37fef7145944547490985c17299535467bd9bfb85e46 49256 vg_1.78.0+ds-1.debian.tar.xz c98efd2de3018ec6dca1d45ece40cbee8068fa8016845ac28dd1601602079f02 17358 vg_1.78.0+ds-1_amd64.buildinfo Files: 54e05824350673080bbab565adcf252d 3551 science optional vg_1.78.0+ds-1.dsc be2756526cde175ec18ef47ef1de2405 24740144 science optional vg_1.78.0+ds.orig.tar.xz dbfc65d59b757bb1c505e1db368a9089 49256 science optional vg_1.78.0+ds-1.debian.tar.xz 072c052e1ffe6e9d97646116ef2f8464 17358 science optional vg_1.78.0+ds-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmrwkiYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEXDA/+PFa4fJPEdazeOSZPjVV6X2Wj6iy8mmeO FWfzGvV1oVsvqAl8DoZMWMNLK6ruk5d4rzU9vXOwc2hAUSMzVqej8k65Ceg+LEJv clSN2KPu8A+qx9OaHoqBigpWgj4iQoWp+nx0fOxUJgW5cPkXEYpxjTF2qe6u1+FN wT51ZSslNxemeDpNrOST+rT2Sn7vW6aqDijh+hMaCCf8OhtTVowarlOxL15v+5LG De7Iaq/bnXDxF7PDgXLzUr2QevS8rNolMOEfpbLLcb3lU70Q9p3MtdryQFmnl0rY EfNSo/Yc2W/rzr5BC1LtgfHt9odtCB3ddFPhZt/9OcZXjEVN/cs21eSY7vEzhn2T pgVZN54Ajqv8YquWUko8NpcIHZ4JZvCGE3jkE1b9gMuXQagHxlnnvOk5O2F/ZoNB RxyTLBHryYmgBDwgfABSkFcLpCwlnXirXGwh7ICmb9orSze7f9tzVdB9F+KNIxDL EeqM/WeOXE3qbw0feaJFTPxfgnGCSAP6gPkkXg1RM3KwBFuCH26aaukOJDLQqksT iFb2wtofljPE/aP0H9MT3vqPZJLpGFekc1K0NUUcdfEmsDGzSDcXg3lJ1Ps0uup0 9PpJNywFcMc9gzm14AFFmd3R6XttG7HChDctDJnwukT/n6WL8sb10iM+mbk98zC0 GAdnhG2Mflw= =3PnA -----END PGP SIGNATURE-----
