-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 12 Sep 2016 10:03:11 +0200 Source: debian-med Binary: med-tasks med-config med-all med-bio med-bio-dev med-cloud med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-rehabilitation med-statistics med-tools med-typesetting Architecture: source all Version: 2.3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-rehabilitation - Debian Med packages for rehabilitation technologies med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Closes: 732069 Changes: debian-med (2.3) unstable; urgency=medium . * blends-dev 0.6.93 does not add single packages to tasksel control file but only the metapackage itself * med-bio: Add mgltools-pmv, mgltools-vision, mgltools-cadd Closes: #732069 . * start of automatic changelog entry * . * Changes in metapackage dependencies -med-tools added: Depends: galileo, r-cran-fitbitscraper Suggests: sleepyhead -med-statistics added: Depends: r-cran-ade4, rstudio, r-bioc-multtest -med-bio-ngs added: Depends: sprai, rna-star, daligner, mhap, dindel, blasr, bcftools -med-bio added: Depends: pbbarcode, spaced, varmatch, cgview, phipack, ffp, snap-aligner, plast, kineticstools, brig, harvest-tools, transrate-tools, meryl, metabit, parsnp, beagle, maffilter, pbhoney, jmodeltest, mgltools-cadd, roadtrips, roary, sim4db, alter-sequence-alignment, graphlan, ncbi-entrez-direct, falconkit, partitionfinder, art-nextgen-simulation-tools, sspace, phybin, fastahack, phylophlan, crux-toolkit, varna, dindel, smithwaterman, r-bioc-geneplotter, dawg, lefse, r-bioc-deseq2, fsm-lite, nanopolish, physamp, minimap, kmc, snpomatic, proteinortho, phast, prottest, qualimap, sprai, fml-asm, circlator, inspect, pipasic, hilive, mgltools-pmv, fastqtl, piler, r-cran-adephylo, r-cran-pscbs, hisat2, ssw-align, garli, pssh2, plink1.9, r-cran-adegenet, velvet | velvet-long, condetri, fastml, mapdamage, rsat, r-cran-distory, segemehl, andi, ncl-tools, sumaclust, sniffles, pbalign, scrm, miniasm, poretools, sparta, pbh5tools, r-cran-bio3d, kronatools, beast2-mcmc, clustalw, dwgsim, pirs, reapr, r-cran-treescape, leaff, seer, surankco, tide, placnet, canu, rambo-k, lofreq, artfastqgenerator, lambda-align, rapmap, metaphlan2, r-bioc-dnacopy, mgltools-vision, indelible, salmon, dazzdb, srst2, king-probe, cutadapt, pbgenomicconsensus, ariba, pbsuite, adapterremoval, kraken, pbjelly, mash, fermi-lite, pbsim, bcftools Suggests: science-workflow, r-bioc-aroma.light, r-cran-pheatmap, mrs, r-bioc-annotationhub, r-bioc-ensembldb, r-bioc-go.db removed: Depends: python-kineticstools, r-other-bio3d, velvet, tigr-assembler, clustalw | clustalw-mpi, python-pbalign, wgsim, wgs-assembler, mrs, act, r8s, fastml2 -med-his added: Depends: openmaxims -med-practice added: Depends: sleepyhead, orthanc removed: Depends: clinica -med-imaging-dev added: Depends: libinsighttoolkit4-dev, octave-bart, libvtk-dicom-dev, libbart-dev, libodil0-dev, libmia-2.4-dev, libcamitk4-dev, libopenigtlink-dev, libvtk6-dev Suggests: libcamp0.7-dev, libfreeimage-dev removed: Depends: libopenigtlink1-dev, libactiviz.net-cil, libvtk5-dev, libinsighttoolkit3-dev | libinsighttoolkit4-dev, libvtk-dicom0.5-dev, libmia-2.2-dev, libcamitk3-dev Suggests: libvtk5.4, insighttoolkit3-examples -med-imaging added: Depends: fw4spl, python-tifffile, bart Suggests: science-workflow, orthanc-postgresql, orthanc-imagej, orthanc-dicomweb removed: Depends: tifffile -med-data added: Suggests: sleepyhead -med-bio-phylogeny added: Depends: iqtree, clustalw removed: Depends: clustalw | clustalw-mpi -med-bio-dev added: Depends: python3-pyvcf | python-pyvcf, libsmithwaterman-dev, mgltools-vision, libbpp-phyl-omics-dev, python3-csb | python-csb, libqcpp-dev, libbio-das-lite-perl, libhtsjdk-java, libqes-dev, python3-biopython | python-biopython, python-kineticstools, libfreecontact-dev, libssw-dev, libminimap-dev, r-cran-rnexml, libssw-java, r-cran-rncl, python3-pymummer, python3-ngs | python-ngs, libpbdata-dev, libbpp-raa-dev, python3-pbconsensuscore | python-pbconsensuscore, libblasr-dev, libbpp-qt-dev, python3-intervaltree-bio | python-intervaltree-bio, libncl-dev, libngs-java, python3-pyfaidx | python-pyfaidx, libbpp-seq-dev, libfast5-dev, r-cran-phylobase, python-pbcommand, libncbi-vdb-dev, libbpp-core-dev, libpbbam-dev, libconsensuscore-dev, libpbihdf-dev, libtabixpp-dev, python3-pyfasta | python-pyfasta, libbpp-phyl-dev, libfml-dev, python3-consensuscore2 | python-consensuscore2, mgltools-networkeditor, libpbseq-dev, libgff-dev, libngs-sdk-dev, octave-bioinfo, libbpp-popgen-dev, mgltools-pybabel, libfastahack-dev, ruby-crb-blast, 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