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bowtie2

ultrafast memory-efficient short read aligner

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general

source: bowtie2 (main)
version: 2.5.4-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Alexandre Mestiashvili [DMD]
arch: all any
std-ver: 4.7.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

oldstable: 2.4.2-2
stable: 2.5.0-3
testing: 2.5.4-1
unstable: 2.5.4-1

versioned links

2.4.2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.5.0-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.5.4-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bowtie2
bowtie2-examples

action needed

debian/patches: 2 patches to forward upstream low

Among the 9 debian patches available in version 2.5.4-1 of the package, we noticed the following issues:

2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2024-08-08 10:03

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.7.0).

Created: 2025-02-21 Last update: 2025-02-27 13:24

news

[2024-08-10] bowtie2 2.5.4-1 MIGRATED to testing (Debian testing watch)
[2024-08-07] Accepted bowtie2 2.5.4-1 (source) into unstable (Andreas Tille)
[2024-04-20] bowtie2 2.5.3-1 MIGRATED to testing (Debian testing watch)
[2024-04-20] bowtie2 2.5.3-1 MIGRATED to testing (Debian testing watch)
[2024-04-17] Accepted bowtie2 2.5.3-1 (source) into unstable (Charles Plessy)
[2024-01-15] bowtie2 2.5.2-1 MIGRATED to testing (Debian testing watch)
[2024-01-10] Accepted bowtie2 2.5.2-1 (source) into unstable (Andreas Tille)
[2023-09-14] bowtie2 2.5.1-1 MIGRATED to testing (Debian testing watch)
[2023-09-12] Accepted bowtie2 2.5.1-1 (source) into unstable (Michael R. Crusoe)
[2023-01-23] bowtie2 2.5.0-3 MIGRATED to testing (Debian testing watch)
[2023-01-22] Accepted bowtie2 2.5.0-4~0exp (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2023-01-17] Accepted bowtie2 2.5.0-3 (source) into unstable (Andreas Tille)
[2022-12-12] Accepted bowtie2 2.5.0-2 (source) into unstable (Andreas Tille)
[2022-11-05] Accepted bowtie2 2.5.0-1 (source) into unstable (Étienne Mollier)
[2022-03-16] bowtie2 2.4.5-1 MIGRATED to testing (Debian testing watch)
[2022-02-17] Accepted bowtie2 2.4.5-1 (source) into unstable (Andreas Tille)
[2021-09-22] bowtie2 2.4.4-1 MIGRATED to testing (Debian testing watch)
[2021-09-13] Accepted bowtie2 2.4.4-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-12-26] Accepted bowtie2 2.4.2-3~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-12-21] bowtie2 2.4.2-2 MIGRATED to testing (Debian testing watch)
[2020-12-21] bowtie2 2.4.2-2 MIGRATED to testing (Debian testing watch)
[2020-12-15] Accepted bowtie2 2.4.2-2 (source) into unstable (Andreas Tille)
[2020-12-10] Accepted bowtie2 2.4.2-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-10-13] bowtie2 2.4.2-1 MIGRATED to testing (Debian testing watch)
[2020-10-07] Accepted bowtie2 2.4.2-1 (source) into unstable (Alexandre Mestiashvili)
[2020-06-04] bowtie2 2.4.1-6 MIGRATED to testing (Debian testing watch)
[2020-06-01] Accepted bowtie2 2.4.1-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-05-25] Accepted bowtie2 2.4.1-5 (source) into unstable (Andreas Tille)
[2020-04-24] bowtie2 2.4.1-4 MIGRATED to testing (Debian testing watch)
[2020-04-21] Accepted bowtie2 2.4.1-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)

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bugs [bug history graph]

all: 0

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version: 2.5.4-1

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