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bowtie2

ultrafast memory-efficient short read aligner

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general

source: bowtie2 (main)
version: 2.5.5-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Steffen Moeller [DMD] – Andreas Tille [DMD] – Alexandre Mestiashvili [DMD]
arch: all any
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 2.4.2-2
oldstable: 2.5.0-3
stable: 2.5.4-1
testing: 2.5.4-1
unstable: 2.5.5-1

versioned links

2.4.2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.5.0-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.5.4-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.5.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bowtie2
bowtie2-examples

action needed

lintian reports 2 warnings normal

Lintian reports 2 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2026-02-23 Last update: 2026-02-23 01:01

debian/patches: 2 patches to forward upstream low

Among the 9 debian patches available in version 2.5.5-1 of the package, we noticed the following issues:

2 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-02-23 11:47

testing migrations

excuses:
- Migration status for bowtie2 (2.5.4-1 to 2.5.5-1): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Too young, only 1 of 2 days old
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/b/bowtie2.html
- ∙ ∙ Autopkgtest for bowtie2/2.5.5-1: amd64: Pass, arm64: Pass, ppc64el: Pass, riscv64: Pass
- ∙ ∙ Reproducible on amd64
- ∙ ∙ Reproducible on arm64
- ∙ ∙ Reproducible on armhf
- ∙ ∙ Reproducible on i386
- ∙ ∙ Reproducible on ppc64el
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- Not considered

news

[2026-02-22] Accepted bowtie2 2.5.5-1 (source) into unstable (Steffen Moeller) (signed by: Andreas Tille)
[2024-08-10] bowtie2 2.5.4-1 MIGRATED to testing (Debian testing watch)
[2024-08-07] Accepted bowtie2 2.5.4-1 (source) into unstable (Andreas Tille)
[2024-04-20] bowtie2 2.5.3-1 MIGRATED to testing (Debian testing watch)
[2024-04-20] bowtie2 2.5.3-1 MIGRATED to testing (Debian testing watch)
[2024-04-17] Accepted bowtie2 2.5.3-1 (source) into unstable (Charles Plessy)
[2024-01-15] bowtie2 2.5.2-1 MIGRATED to testing (Debian testing watch)
[2024-01-10] Accepted bowtie2 2.5.2-1 (source) into unstable (Andreas Tille)
[2023-09-14] bowtie2 2.5.1-1 MIGRATED to testing (Debian testing watch)
[2023-09-12] Accepted bowtie2 2.5.1-1 (source) into unstable (Michael R. Crusoe)
[2023-01-23] bowtie2 2.5.0-3 MIGRATED to testing (Debian testing watch)
[2023-01-22] Accepted bowtie2 2.5.0-4~0exp (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2023-01-17] Accepted bowtie2 2.5.0-3 (source) into unstable (Andreas Tille)
[2022-12-12] Accepted bowtie2 2.5.0-2 (source) into unstable (Andreas Tille)
[2022-11-05] Accepted bowtie2 2.5.0-1 (source) into unstable (Étienne Mollier)
[2022-03-16] bowtie2 2.4.5-1 MIGRATED to testing (Debian testing watch)
[2022-02-17] Accepted bowtie2 2.4.5-1 (source) into unstable (Andreas Tille)
[2021-09-22] bowtie2 2.4.4-1 MIGRATED to testing (Debian testing watch)
[2021-09-13] Accepted bowtie2 2.4.4-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-12-26] Accepted bowtie2 2.4.2-3~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-12-21] bowtie2 2.4.2-2 MIGRATED to testing (Debian testing watch)
[2020-12-21] bowtie2 2.4.2-2 MIGRATED to testing (Debian testing watch)
[2020-12-15] Accepted bowtie2 2.4.2-2 (source) into unstable (Andreas Tille)
[2020-12-10] Accepted bowtie2 2.4.2-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-10-13] bowtie2 2.4.2-1 MIGRATED to testing (Debian testing watch)
[2020-10-07] Accepted bowtie2 2.4.2-1 (source) into unstable (Alexandre Mestiashvili)
[2020-06-04] bowtie2 2.4.1-6 MIGRATED to testing (Debian testing watch)
[2020-06-01] Accepted bowtie2 2.4.1-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-05-25] Accepted bowtie2 2.4.1-5 (source) into unstable (Andreas Tille)
[2020-04-24] bowtie2 2.4.1-4 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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ubuntu

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version: 2.5.4-1build1

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