snakemake - Debian Package Tracker

general

source: snakemake (main)
version: 7.32.4-8.1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Rebecca N. Palmer [DMD] – Kevin Murray [DMD]
arch: all
std-ver: 4.7.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 5.24.1-2
oldstable: 7.21.0-1
stable: 7.32.4-7
unstable: 7.32.4-8.1

versioned links

5.24.1-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.21.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.32.4-7: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.32.4-8.1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

snakemake (1 bugs: 0, 1, 0, 0)
snakemake-doc

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:22:11
Last run: 2026-01-28T19:36:24.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:18
Last run: 2026-02-01T14:22:59.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:20:29
Last run: 2025-11-09T05:30:11.000Z
Previous status: unknown

Created: 2026-02-01 Last update: 2026-02-03 06:01

A new upstream version is available: 9.16.2 high

A new upstream version 9.16.2 is available, you should consider packaging it.

Created: 2025-11-26 Last update: 2026-02-03 02:02

debian/patches: 2 patches with invalid metadata, 18 patches to forward upstream high

Among the 25 debian patches available in version 7.32.4-8.1 of the package, we noticed the following issues:

2 patches with invalid metadata that ought to be fixed.
18 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2025-12-30 08:00

lintian reports 2 errors and 7 warnings high

Lintian reports 2 errors and 7 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2025-12-30 Last update: 2025-12-30 05:30

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 2-day delay is over. Check why.

Created: 2026-01-31 Last update: 2026-02-03 06:01

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 8.2.3-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 0a5189199c482a56ff09aeeb11664e8133c62f4f
Author: Bastian Germann <bage@debian.org>
Date:   Mon Dec 29 15:47:05 2025 +0100

    Drop unused ratelimiter dependency

commit 730c0702ebbb3aa28257753e4a964f4a7e29864b
Author: Alexandre Detiste <alexandre.detiste@gmail.com>
Date:   Wed Dec 3 17:11:06 2025 +0100

    use dh-sequence-python3

commit c707803f5ca8b5ceb5f648ba91cbd6cbe2e2c7db
Author: Alexandre Detiste <alexandre.detiste@gmail.com>
Date:   Wed Dec 3 17:10:30 2025 +0100

    bump Standards-Version to 4.7.2

commit 0fff9fda33c6c57b7cd25996c5271c40bf01e669
Author: Alexandre Detiste <alexandre.detiste@gmail.com>
Date:   Wed Dec 3 17:10:11 2025 +0100

    drop "Rules-Requires-Root: no": it is the default now

commit 1afadca95aedc59c80ae7566a4ef2aa05c7b0dfc
Author: Alexandre Detiste <tchet@debian.org>
Date:   Wed Sep 24 12:32:17 2025 +0200

    replace dependency on transitional python3-tz with new python3-pytz

commit 2b723c75f116540fd9b2aa7ae43f08bde72a6967
Author: Alexandre Detiste <tchet@debian.org>
Date:   Sat Apr 12 13:46:49 2025 +0200

    remove Py2 vs 3 crumb

commit e160250192cdeefab21cf469cf70b9419b09bf37
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sat Jan 20 11:53:18 2024 +0000

    Docs: keep RTD theme, as we don't have the one upstream now use.

commit 55f94e3207eab69f40c2bdb7a294ce5f96248fa7
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sat Jan 20 11:23:40 2024 +0000

    Drop / refresh patches.

commit df264c14753b508052438a8e40c0e71e9ccae989
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sat Jan 20 10:48:06 2024 +0000

    Update d/copyright.

commit df33957e74717a43a481319938ed9653eb824528
Merge: e973868 cc1b500
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sat Jan 20 10:42:57 2024 +0000

    Update upstream source from tag 'upstream/8.2.3'
    
    Update to upstream version '8.2.3'
    with Debian dir 65b136a886b2775525b212ae981b748e27e5ddeb

commit cc1b5000001289ef4cd0ac0f1ae903e864b45d22
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sat Jan 20 10:42:31 2024 +0000

    New upstream version 8.2.3

Created: 2024-01-20 Last update: 2026-01-29 15:30

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.3 instead of 4.7.2).

Created: 2025-12-23 Last update: 2025-12-29 23:00

testing migrations

excuses:
- Migration status: Blocked. Can't migrate due to a non-migratable dependency. Check status below.
- Blocked by: python-throttler
- Migrates after: yte
- Migration status for snakemake (- to 7.32.4-8.1): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
- Issues preventing migration:
- ∙ ∙ Build-Depends(-Arch): snakemake python-throttler (not considered)
- ∙ ∙ Depends: snakemake python-throttler (not considered)
- ∙ ∙ Invalidated by build-dependency
- ∙ ∙ Invalidated by dependency
- ∙ ∙ Build-Depends(-Arch): snakemake yte
- ∙ ∙ Depends: snakemake yte
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/snakemake.html
- ∙ ∙ Autopkgtest for snakemake/7.32.4-8.1: amd64: Pass, arm64: Pass, i386: Pass, ppc64el: Pass, riscv64: Pass, s390x: Pass
- ∙ ∙ Reproducible on amd64
- ∙ ∙ Reproducible on arm64
- ∙ ∙ Reproducible on armhf
- ∙ ∙ Reproducible on i386
- ∙ ∙ Reproducible on ppc64el
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- ∙ ∙ 35 days old (needed 2 days)
- Not considered

news

[rss feed]

[2026-02-01] snakemake REMOVED from testing (Debian testing watch)
[2026-01-01] snakemake 7.32.4-8.1 MIGRATED to testing (Debian testing watch)
[2025-12-29] Accepted snakemake 7.32.4-8.1 (source) into unstable (Bastian Germann) (signed by: bage@debian.org)
[2025-12-07] snakemake 7.32.4-8 MIGRATED to testing (Debian testing watch)
[2025-12-03] Accepted snakemake 7.32.4-8 (source) into unstable (Alexandre Detiste)
[2025-02-12] snakemake 7.32.4-7 MIGRATED to testing (Debian testing watch)
[2025-02-09] Accepted snakemake 7.32.4-7 (source) into unstable (Rebecca N. Palmer)
[2024-12-14] snakemake 7.32.4-6 MIGRATED to testing (Debian testing watch)
[2024-12-09] snakemake REMOVED from testing (Debian testing watch)
[2024-10-10] snakemake 7.32.4-6 MIGRATED to testing (Debian testing watch)
[2024-10-07] Accepted snakemake 7.32.4-6 (source) into unstable (Rebecca N. Palmer)
[2024-08-10] snakemake 7.32.4-5 MIGRATED to testing (Debian testing watch)
[2024-08-07] Accepted snakemake 7.32.4-5 (source) into unstable (Rebecca N. Palmer)
[2024-08-03] Accepted snakemake 7.32.4-4 (source) into unstable (Rebecca N. Palmer)
[2024-08-01] snakemake REMOVED from testing (Debian testing watch)
[2024-04-12] snakemake 7.32.4-3 MIGRATED to testing (Debian testing watch)
[2024-04-07] Accepted snakemake 7.32.4-3 (source) into unstable (Rebecca N. Palmer)
[2024-02-13] snakemake 7.32.4-2 MIGRATED to testing (Debian testing watch)
[2024-02-10] Accepted snakemake 7.32.4-2 (source) into unstable (Rebecca N. Palmer)
[2024-01-22] snakemake 7.32.4-1 MIGRATED to testing (Debian testing watch)
[2024-01-21] snakemake REMOVED from testing (Debian testing watch)
[2023-11-30] snakemake 7.32.4-1 MIGRATED to testing (Debian testing watch)
[2023-11-27] Accepted snakemake 7.32.4-1 (source) into unstable (Rebecca N. Palmer)
[2023-08-06] snakemake 7.21.0-2 MIGRATED to testing (Debian testing watch)
[2023-08-03] Accepted snakemake 7.21.0-2 (source) into unstable (Rebecca N. Palmer)
[2023-02-11] snakemake 7.21.0-1 MIGRATED to testing (Debian testing watch)
[2023-02-07] Accepted snakemake 7.21.0-1 (source) into unstable (Rebecca N. Palmer)
[2023-02-05] snakemake 7.20.0-1 MIGRATED to testing (Debian testing watch)
[2023-02-02] Accepted snakemake 7.20.0-1 (source) into unstable (Rebecca N. Palmer)
[2023-01-17] snakemake 7.19.1-1 MIGRATED to testing (Debian testing watch)

bugs [bug history graph]

all: 2
RC: 0
I&N: 2
M&W: 0
F&P: 0
patch: 0

links

homepage
lintian (2, 7)
buildd: logs
popcon
browse source code
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screenshots
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 7.32.4-8.1