snakemake - Debian Package Tracker

general

source: snakemake (main)
version: 7.21.0-2
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Rebecca N. Palmer [DMD] [DM] – Kevin Murray [DMD]
arch: all
std-ver: 4.6.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 5.4.0-1
oldstable: 5.24.1-2
stable: 7.21.0-1
testing: 7.21.0-2
unstable: 7.21.0-2

versioned links

5.4.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
5.24.1-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.21.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.21.0-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

snakemake
snakemake-doc

action needed

Marked for autoremoval on 09 November due to python-marshmallow: #1052847 high

Version 7.21.0-2 of snakemake is marked for autoremoval from testing on Thu 09 Nov 2023. It depends (transitively) on python-marshmallow, affected by #1052847. You should try to prevent the removal by fixing these RC bugs.

Created: 2023-10-03 Last update: 2023-10-04 06:34

A new upstream version is available: 7.32.4 high

A new upstream version 7.32.4 is available, you should consider packaging it.

Created: 2023-02-16 Last update: 2023-10-04 03:36

debian/patches: 2 patches with invalid metadata, 12 patches to forward upstream high

Among the 18 debian patches available in version 7.21.0-2 of the package, we noticed the following issues:

2 patches with invalid metadata that ought to be fixed.
12 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2023-08-04 09:46

lintian reports 2 errors and 6 warnings high

Lintian reports 2 errors and 6 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2023-02-10 Last update: 2023-02-18 03:39

Fails to build during reproducibility testing normal

A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!

Created: 2023-06-10 Last update: 2023-10-03 23:44

version in VCS is newer than in repository, is it time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 7.30.2-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 21c7d1d70c48071127c08de9175453fd48f05721
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sun Aug 20 10:31:55 2023 +0100

    Clean up after docs build.  (Closes: #1045316)

commit aa1660a8967b604be0e149c5c9d7d6ca553912c0
Merge: 82ee8fd db39887
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Fri Aug 4 07:38:05 2023 +0100

    Merge branch 'sphinx7fix'

commit 82ee8fd127ec570cc288d7d9f2e66b52ec2bd085
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Thu Aug 3 21:28:32 2023 +0100

    Revert "test building with Sphinx 7"
    
    This reverts commit 2a09ace4926c71ef8a8a061181a510fb878e603e.

commit 2a09ace4926c71ef8a8a061181a510fb878e603e
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Thu Aug 3 20:01:31 2023 +0100

    test building with Sphinx 7

commit 2c92a9918042030bd88d05b10cf23c2b1d90b681
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Thu Aug 3 19:59:30 2023 +0100

    Docs: allow building with Sphinx 7.  (Closes: #1042692)

commit 42a7c5011bb6a500c1ba609abcd661b3fb9bc60b
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sun Jul 23 16:40:05 2023 +0100

    Add timeout to tests (giving a traceback when they hang).
    
    They currently do so in reprotest

commit 37b2b1d32b18d8db7106160353658af0f7f7af4b
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sun Jul 23 11:35:46 2023 +0100

    Refresh patches

commit 64dd3c3142d8a017be35ddd6a4607f0ad2baea79
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sun Jul 23 11:34:28 2023 +0100

    New upstream version 7.30.2

commit 79db3f35e28ac4c344797a4d86261a66e9eb15b1
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Sun Jul 23 11:32:58 2023 +0100

    Re-enable yte-using tests.

commit 920796d19af0ed166a119fe47e01e4271e874825
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Mon Jun 12 20:08:51 2023 +0100

    Skip failing tests.

commit 4c1e77d08e89478b1447b5e419bbe61a7936ece3
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Mon Jun 12 08:03:23 2023 +0100

    Refresh patches.

commit da9e1967cd9794a40b2702d9f4cd746b18181878
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Mon Jun 12 07:39:53 2023 +0100

    Update d/copyright.

commit e5eff0720937fa4fceae63eb5d739cfd404c06b3
Merge: 46c715a 5dce27f
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Mon Jun 12 07:30:08 2023 +0100

    Update upstream source from tag 'upstream/7.28.1'
    
    Update to upstream version '7.28.1'
    with Debian dir 36571f621b1295c3636a1fd06d5e5f1fd1a120e4

commit 5dce27f975339206b5900b3a16963a7322d57e8f
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Date:   Mon Jun 12 07:29:40 2023 +0100

    New upstream version 7.28.1

Created: 2023-06-12 Last update: 2023-09-29 09:38

news

[rss feed]

[2023-08-06] snakemake 7.21.0-2 MIGRATED to testing (Debian testing watch)
[2023-08-03] Accepted snakemake 7.21.0-2 (source) into unstable (Rebecca N. Palmer)
[2023-02-11] snakemake 7.21.0-1 MIGRATED to testing (Debian testing watch)
[2023-02-07] Accepted snakemake 7.21.0-1 (source) into unstable (Rebecca N. Palmer)
[2023-02-05] snakemake 7.20.0-1 MIGRATED to testing (Debian testing watch)
[2023-02-02] Accepted snakemake 7.20.0-1 (source) into unstable (Rebecca N. Palmer)
[2023-01-17] snakemake 7.19.1-1 MIGRATED to testing (Debian testing watch)
[2023-01-11] Accepted snakemake 7.19.1-1 (source) into unstable (Andreas Tille)
[2022-11-09] snakemake 7.12.1-1 MIGRATED to testing (Debian testing watch)
[2022-08-24] Accepted snakemake 7.12.1-1 (source) into unstable (Andreas Tille)
[2022-07-29] Accepted snakemake 7.12.0-1 (source) into unstable (Nilesh Patra)
[2022-07-26] Accepted snakemake 7.9.0-1 (source) into unstable (Andreas Tille)
[2022-07-24] snakemake REMOVED from testing (Debian testing watch)
[2022-07-09] snakemake 7.8.5-2 MIGRATED to testing (Debian testing watch)
[2022-07-07] Accepted snakemake 7.8.5-2 (source) into unstable (Nilesh Patra)
[2022-07-05] Accepted snakemake 7.8.5-1 (source) into unstable (Nilesh Patra)
[2022-06-28] snakemake 7.8.3-2 MIGRATED to testing (Debian testing watch)
[2022-06-25] Accepted snakemake 7.8.3-2 (source) into unstable (Nilesh Patra)
[2022-06-25] Accepted snakemake 7.8.3-1 (source) into unstable (Nilesh Patra)
[2022-03-11] snakemake 6.15.5-1 MIGRATED to testing (Debian testing watch)
[2022-03-09] Accepted snakemake 6.15.5-1 (source) into unstable (Rebecca N. Palmer)
[2022-02-20] snakemake 6.15.1-2 MIGRATED to testing (Debian testing watch)
[2022-02-05] Accepted snakemake 6.15.1-2 (source) into unstable (Rebecca N. Palmer)
[2022-02-05] Accepted snakemake 6.15.1-1~exp1 (source all) into experimental, experimental (Debian FTP Masters) (signed by: Andreas Tille)
[2022-01-11] Accepted snakemake 6.12.3-1 (source) into unstable (Rebecca N. Palmer)
[2021-11-12] snakemake 6.10.0+dfsg1-1 MIGRATED to testing (Debian testing watch)
[2021-11-09] Accepted snakemake 6.10.0+dfsg1-1 (source) into unstable (Nilesh Patra)
[2021-10-26] snakemake 6.9.1+dfsg1-4 MIGRATED to testing (Debian testing watch)
[2021-10-23] Accepted snakemake 6.9.1+dfsg1-4 (source) into unstable (Nilesh Patra)
[2021-10-23] snakemake 6.9.1+dfsg1-3 MIGRATED to testing (Debian testing watch)

bugs [bug history graph]

all: 1
RC: 0
I&N: 0
M&W: 0
F&P: 1
patch: 0

links

homepage
lintian (2, 6)
buildd: logs, reproducibility
popcon
browse source code
edit tags
other distros
screenshots
debian patches
debci

ubuntu

[Information about Ubuntu for Debian Developers]

version: 7.21.0-2
1 bug