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bioperl

Perl tools for computational molecular biology

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general

source: bioperl (main)
version: 1.7.8-4
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Steffen Moeller [DMD] – Olivier Sallou [DMD] – Étienne Mollier [DMD]
arch: all
std-ver: 4.7.4
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.7.7-2
oldstable: 1.7.8-1
stable: 1.7.8-1
testing: 1.7.8-4
unstable: 1.7.8-4

versioned links

1.7.7-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7.8-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.7.8-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bioperl
libbio-perl-perl

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:03:33
Last run: 2026-06-29T01:49:20.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:02:30
Last run: 2026-06-11T20:23:05.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:02:18
Last run: 2025-11-10T03:04:33.000Z
Previous status: unknown

Created: 2026-05-11 Last update: 2026-06-29 19:04

1 new commit since last upload, is it time to release? normal

vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:

commit 6d8268c953d02d12408e3de93e022d63120ffcc2
Author: Étienne Mollier <emollier@debian.org>
Date:   Wed Jun 24 20:12:22 2026 +0200

    fix-missing-Test-modules.patch: forwarded upstream.

Created: 2026-06-24 Last update: 2026-06-24 18:50

debian/patches: 1 patch to forward upstream low

Among the 4 debian patches available in version 1.7.8-4 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2026-06-22 Last update: 2026-06-22 09:32

news

[2026-06-27] bioperl 1.7.8-4 MIGRATED to testing (Debian testing watch)
[2026-06-21] Accepted bioperl 1.7.8-4 (source) into unstable (Étienne Mollier)
[2026-01-27] bioperl 1.7.8-3 MIGRATED to testing (Debian testing watch)
[2026-01-25] Accepted bioperl 1.7.8-3 (source) into unstable (Charles Plessy)
[2025-09-06] bioperl 1.7.8-2 MIGRATED to testing (Debian testing watch)
[2025-09-03] Accepted bioperl 1.7.8-2 (source) into unstable (gregor herrmann)
[2021-08-18] bioperl 1.7.8-1 MIGRATED to testing (Debian testing watch)
[2021-08-15] Accepted bioperl 1.7.8-1 (source) into unstable (Nilesh Patra)
[2020-10-31] bioperl 1.7.7-2 MIGRATED to testing (Debian testing watch)
[2020-10-31] bioperl 1.7.7-2 MIGRATED to testing (Debian testing watch)
[2020-10-28] Accepted bioperl 1.7.7-2 (source) into unstable (Steffen Moeller)
[2019-12-17] bioperl 1.7.7-1 MIGRATED to testing (Debian testing watch)
[2019-12-14] Accepted bioperl 1.7.7-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-30] bioperl 1.7.6-3 MIGRATED to testing (Debian testing watch)
[2019-11-28] Accepted bioperl 1.7.6-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-27] Accepted bioperl 1.7.6-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-11-26] Accepted bioperl 1.7.6-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2019-07-27] Accepted bioperl 1.7.5-1 (source all) into unstable (Steffen Moeller)
[2019-02-05] Accepted bioperl 1.7.4-1 (source) into unstable (Andreas Tille)
[2018-10-30] bioperl 1.7.2-3 MIGRATED to testing (Debian testing watch)
[2018-10-27] Accepted bioperl 1.7.2-3 (source) into unstable (Andreas Tille)
[2017-12-19] bioperl 1.7.2-2 MIGRATED to testing (Debian testing watch)
[2017-12-13] Accepted bioperl 1.7.2-2 (source) into unstable (gregor herrmann) (signed by: Andreas Tille)
[2017-12-09] bioperl 1.7.2-1 MIGRATED to testing (Debian testing watch)
[2017-12-03] Accepted bioperl 1.7.2-1 (source) into unstable (Andreas Tille)
[2017-09-08] bioperl 1.7.1-3 MIGRATED to testing (Debian testing watch)
[2017-09-02] Accepted bioperl 1.7.1-3 (source) into unstable (Carnë Draug) (signed by: Andreas Tille)
[2017-01-26] bioperl 1.7.1-2 MIGRATED to testing (Debian testing watch)
[2017-01-15] Accepted bioperl 1.7.1-2 (source all) into unstable (Andreas Tille)
[2016-12-16] bioperl 1.7.1-1 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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ubuntu

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version: 1.7.8-3

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