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vg

tools for working with genome variation graphs

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general
  • source: vg (main)
  • version: 1.59.0+ds-0.1
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD]
  • arch: all amd64 arm64 mips64el ppc64el s390x x32
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.30.0+ds-1
  • unstable: 1.59.0+ds-0.1
versioned links
  • 1.30.0+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.59.0+ds-0.1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • vg
  • vg-docs
action needed
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:01:05
    Last run: 2026-10-02T05:39:13.000Z
    Previous status: unknown

  • testing: pass (log)
    The tests ran in 0:01:45
    Last run: 2022-08-28T02:35:19.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:01:45
    Last run: 2023-05-24T18:22:03.000Z
    Previous status: unknown

Created: 2026-04-10 Last update: 2026-10-25 05:00
A new upstream version is available: 1.78.0 high
A new upstream version 1.78.0 is available, you should consider packaging it.
Created: 2025-11-27 Last update: 2026-10-25 02:30
lintian reports 4 errors and 7 warnings high
Lintian reports 4 errors and 7 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2021-10-23 Last update: 2026-02-16 10:49
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2026-04-13 Last update: 2026-10-25 04:33
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 1.78.0+ds-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 2f7b181ef3a2e9c8afb05125e9ddf3812a8e3489
Author: Andreas Tille <tille@debian.org>
Date:   Sat Oct 24 11:34:41 2026 +0200

    libdozeu done

commit 14e9e489ece1cf5dfe782e09ce1e9d7592f3d967
Author: Andreas Tille <tille@debian.org>
Date:   Fri Oct 23 13:45:06 2026 +0200

    Update TODO list

commit 73e82f9b36ac3642472fb7fcbb7a413e66ea28dc
Author: Andreas Tille <tille@debian.org>
Date:   Fri Oct 23 08:16:18 2026 +0200

    Update todo list

commit 156caefb33d3c2f51122eff52eb8a63ae3bc45d5
Author: Andreas Tille <tille@debian.org>
Date:   Thu Oct 22 11:52:24 2026 +0200

    Order the vg dependency packaging plan
    
    Arrange the remaining dependencies so each item can be built after the
    items above it.  Put libhandlegraph first because libgbwtgraph, libbdsg,
    libxg and libvgio all need it and it does not depend on the packages
    currently in NEW.  Record that libsdsl is done, that libsonlib, libgbwt
    and libgcsa2 are in NEW, and that libssw should be updated rather than
    packaged as a second fork.

commit 0723317748d5d25e06a37bbcb53d01914c6bcaaf
Author: Andreas Tille <tille@debian.org>
Date:   Thu Oct 22 11:37:26 2026 +0200

    Added remarks

commit 80ddd7301df82ea9335a6dcc51a5f9661d77bb6e
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 17:12:12 2026 +0200

    Add overview of vg dependencies to package for Debian

commit 9b5c9d6b9a5fb7ae71a46082dd23202fe6100b92
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 16:50:03 2026 +0200

    Deactivate quilt patches that patch bundled deps/
    
    The vg source tarball does not ship deps/ (all dependencies are expected
    to come from Debian packages). Deactivate patches whose hunks only
    modify files under deps/, and trim the mixed patches to their non-deps
    (use-packaged-dependency) changes:
    
    * Deactivate (comment out in series): no_pg, hardening_flags,
      use_packaged_lz4, parallize_better, crossbuild, python3
    * Trim simde to the Makefile and src/preflight* portability changes
      (use of packaged libsimde-dev)
    * Trim use_packaged_libtsl-hopscotch-map-dev to the Makefile change
      (use of packaged libtsl-hopscotch-map-dev)

commit 2a68633caa65662cbc5fef17f35627636a98c9d3
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 16:11:09 2026 +0200

    Rebase quilt patches for vg 1.78.0+ds
    
    Refresh all remaining patches to apply cleanly against the new
    upstream 1.78.0+ds source tree, and drop patches that are now obsolete
    (already upstream or for removed dependencies):
    
    * Drop gcc-12, no_need_for_snappy, use_packaged_fermi-lite,
      libVCFH_unneeded, better_clean, avoid_abs_confusion
    * Refresh use_packaged_* patches for the new Makefile, drop the
      now-obsolete source_me.sh hunk from crossbuild, and add
      Assisted-By trailers

commit f9dea267377625165bf1564598f31de07f2db35e
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:57:58 2026 +0200

    debputy lint --auto-fix (routine-update)

commit d1b0c979c0e70251eb2df61d49227f60122040f2
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 12:57:52 2026 +0100

    Replace FSF postal address with a reference to https://www.gnu.org/licenses/.
    
    Changes-By: lintian-brush
    Fixes: lintian: source: old-fsf-address-in-copyright-file
    See-also: https://lintian.debian.org/tags/old-fsf-address-in-copyright-file.html

commit 8af0dd0160cf0271b7ec2fc6caf7eddfcddecac1
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:57:44 2026 +0200

    Drop 'Rules-Requires-Root: no' from d/control (routine-update)

commit f3d34a08c8c7063f2ca2d148b073a3d62ddb7916
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:57:22 2026 +0200

    Changes made by cme

commit 6646e98c80c012a3954ff806f59d0a3abada4bfb
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:50:32 2026 +0200

    Standards-Version: 4.7.4 (routine-update)

commit f802d8c402ecd58a71e77e9e16fd61e6671909ea
Merge: b4c84a3 e106f36
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:50:32 2026 +0200

    Update upstream source from tag 'upstream/1.78.0+ds'
    
    Update to upstream version '1.78.0+ds'
    with Debian dir b6bce55a7c5e8eae1e4af38e2de5c1f9095a3ac3

commit e106f36e2d76ae7e9c232e7232c70cf3ca253d7d
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:50:20 2026 +0200

    New upstream version 1.78.0+ds

commit b4c84a32eb0a5063cf6a55c9a9688c7be1499229
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:50:19 2026 +0200

    New upstream version

commit 9e77d70e0d2c9c492a28f77fc6854696d7d1d368
Author: Andreas Tille <tille@debian.org>
Date:   Wed Oct 21 13:49:43 2026 +0200

    d/watch: version=5
Created: 2026-10-21 Last update: 2026-10-24 12:20
debian/patches: 1 patch to forward upstream low

Among the 25 debian patches available in version 1.59.0+ds-0.1 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2024-11-24 21:35
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.6.2).
Created: 2021-08-18 Last update: 2026-03-31 15:01
testing migrations
  • excuses:
    • Migration status for vg (- to 1.59.0+ds-0.1): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating vg would introduce bugs in testing: #1089275, #1113618
    • ∙ ∙ Autopkgtest for vg/1.59.0+ds-0.1: amd64: Failed ♻, arm64: Failed ♻
    • ∙ ∙ New but not reproduced on amd64 - info: vg
    • ∙ ∙ New but not reproduced on arm64 - info: vg
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/v/vg.html
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • ∙ ∙ 700 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2024-11-24] Accepted vg 1.59.0+ds-0.1 (source) into unstable (Bastian Germann) (signed by: bage@debian.org)
  • [2022-09-06] vg REMOVED from testing (Debian testing watch)
  • [2022-08-21] vg 1.30.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2022-08-20] vg REMOVED from testing (Debian testing watch)
  • [2021-02-01] vg 1.30.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-27] Accepted vg 1.30.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-12-26] Accepted vg 1.29.0+ds-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-12-23] vg 1.29.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-12-17] Accepted vg 1.29.0+ds-1 (source) into unstable (Étienne Mollier)
  • [2020-11-29] Accepted vg 1.27.1+ds-2~0exp0simde (source) into experimental (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-10-10] vg 1.27.1+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-10-05] Accepted vg 1.27.1+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-09-03] vg 1.26.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-08-29] Accepted vg 1.26.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-08-06] vg 1.25.0+ds-3 MIGRATED to testing (Debian testing watch)
  • [2020-07-31] Accepted vg 1.25.0+ds-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-07-21] vg 1.25.0+ds-2 MIGRATED to testing (Debian testing watch)
  • [2020-07-14] Accepted vg 1.25.0+ds-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-06-25] Accepted vg 1.25.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-05-29] vg 1.24.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-05-23] Accepted vg 1.24.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-04-25] vg 1.23.0+ds-2 MIGRATED to testing (Debian testing watch)
  • [2020-04-20] Accepted vg 1.23.0+ds-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-04-06] vg 1.23.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-03-30] Accepted vg 1.23.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-03-03] vg 1.22.0+ds-1 MIGRATED to testing (Debian testing watch)
  • [2020-02-26] Accepted vg 1.22.0+ds-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-02-25] Accepted vg 1.21.0+ds2-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-02-25] vg 1.21.0+ds2-3 MIGRATED to testing (Debian testing watch)
  • [2020-02-12] Accepted vg 1.21.0+ds2-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • 1
  • 2
bugs [bug history graph]
  • all: 6
  • RC: 2
  • I&N: 3
  • M&W: 1
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (4, 7)
  • buildd: logs, cross
  • popcon
  • browse source code
  • other distros
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.59.0+ds-0.1
  • 1 bug

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