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stacks

pipeline for building loci from short-read DNA sequences

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general
  • source: stacks (main)
  • version: 2.68+dfsg-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: any
  • std-ver: 4.7.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.55+dfsg-1
  • oldstable: 2.62+dfsg-1
  • stable: 2.68+dfsg-2
  • testing: 2.68+dfsg-2
  • unstable: 2.68+dfsg-4
versioned links
  • 2.55+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.62+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.68+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.68+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • stacks
action needed
Problems while searching for a new upstream version high
uscan had problems while searching for a new upstream version:
In debian/watch no matching files for watch source
  https://creskolab.uoregon.edu/stacks/
Created: 2026-01-29 Last update: 2026-04-24 21:17
lintian reports 2 warnings normal
Lintian reports 2 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2026-04-22 Last update: 2026-04-22 18:00
debian/patches: 7 patches to forward upstream low

Among the 7 debian patches available in version 2.68+dfsg-4 of the package, we noticed the following issues:

  • 7 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2026-04-22 17:01
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.0).
Created: 2025-02-21 Last update: 2026-04-22 10:49
testing migrations
  • excuses:
    • Migration status for stacks (2.68+dfsg-2 to 2.68+dfsg-4): Waiting for test results or another package, or too young (no action required now - check later)
    • Issues preventing migration:
    • ∙ ∙ Too young, only 3 of 5 days old
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/stacks.html
    • ∙ ∙ Autopkgtest for stacks/2.68+dfsg-4: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, i386: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: No tests, superficial or marked flaky ♻, s390x: No tests, superficial or marked flaky ♻
    • ∙ ∙ Reproduced on amd64
    • ∙ ∙ Reproduced on arm64
    • ∙ ∙ Reproduced on armhf
    • ∙ ∙ Reproduced on i386
    • ∙ ∙ Reproduced on ppc64el
    • Not considered
news
[rss feed]
  • [2026-04-22] Accepted stacks 2.68+dfsg-4 (source) into unstable (Marcos Talau)
  • [2025-02-21] stacks 2.68+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-02-16] Accepted stacks 2.68+dfsg-2 (source) into unstable (Étienne Mollier)
  • [2024-09-05] stacks 2.68+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-08-31] Accepted stacks 2.68+dfsg-1 (source) into unstable (Étienne Mollier)
  • [2024-08-15] stacks 2.67+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-08-10] Accepted stacks 2.67+dfsg-1 (source) into unstable (Lance Lin)
  • [2024-01-29] stacks 2.66+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-01-23] Accepted stacks 2.66+dfsg-1 (source) into unstable (Lance Lin)
  • [2023-09-26] stacks 2.65+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2023-09-20] Accepted stacks 2.65+dfsg-2 (source) into unstable (Lance Lin) (signed by: Andreas Tille)
  • [2023-09-05] stacks 2.65+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-08-30] Accepted stacks 2.65+dfsg-1 (source) into unstable (Lance Lin) (signed by: Andreas Tille)
  • [2022-10-02] stacks 2.62+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-09-27] Accepted stacks 2.62+dfsg-1 (source) into unstable (Andreas Tille)
  • [2021-11-07] stacks 2.60+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-11-01] Accepted stacks 2.60+dfsg-1 (source) into unstable (Nilesh Patra)
  • [2021-08-21] stacks 2.59+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-08-15] Accepted stacks 2.59+dfsg-1 (source) into unstable (Nilesh Patra)
  • [2021-01-16] stacks 2.55+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-10] Accepted stacks 2.55+dfsg-1 (source) into unstable (Nilesh Patra)
  • [2020-09-20] stacks 2.54+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2020-09-15] Accepted stacks 2.54+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2020-05-01] stacks 2.53+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2020-04-26] Accepted stacks 2.53+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2020-04-01] stacks 2.52+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2020-03-26] Accepted stacks 2.52+dfsg-1 (source) into unstable (Steffen Moeller)
  • [2019-08-24] stacks 2.41+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2019-07-12] Accepted stacks 2.41+dfsg-1 (source) into unstable (Andreas Tille)
  • [2018-09-18] stacks 2.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
links
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  • version: 2.68+dfsg-2build1

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