Register | Log in

t-coffee

Multiple Sequence Alignment

Choose email to subscribe with

general

source: t-coffee (main)
version: 12.00.7fb08c2-4
maintainer: Debian Med Packaging Team (archive) [DMD] [LowNMU]
uploaders: Andreas Tille [DMD] – Steffen Moeller [DMD]
arch: all any
std-ver: 4.3.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 9.02.r1228-2
oldstable: 11.00.8cbe486-1
stable: 11.00.8cbe486-5
testing: 12.00.7fb08c2-2
unstable: 12.00.7fb08c2-4

versioned links

9.02.r1228-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
11.00.8cbe486-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
11.00.8cbe486-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
12.00.7fb08c2-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
12.00.7fb08c2-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

t-coffee
t-coffee-examples

action needed

Marked for autoremoval on 28 March: #922149 high

Version 12.00.7fb08c2-2 of t-coffee is marked for autoremoval from testing on Thu 28 Mar 2019. It is affected by #922149. The removal of t-coffee will also cause the removal of (transitive) reverse dependencies: ariba, bcbio, bioperl-run, changeo, cnvkit, gasic, graphlan, gubbins, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, mobyle, mobyle-programs, mobyle-tutorials, presto, python-biopython, python-gffutils, python-treetime, qcumber, seqmagick, seqsero, srst2. You should try to prevent the removal by fixing these RC bugs.

Created: 2019-02-19 Last update: 2019-02-20 08:07

2 new commits since last upload, time to upload? normal

vcswatch reports that this package seems to have a new changelog entry (version 12.00.7fb08c2-5, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:

commit 48d6ff022c3bf00cc14f3cb1fbf81946ed4caabc
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Fri Feb 15 06:52:52 2019 -0800

    t-coffee-examples: mark Multi-Arch: foreign

commit a7229134638d5a0c43835784f7bbb537a8e187b2
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Fri Feb 15 06:51:38 2019 -0800

    Don't hide the build flags

Created: 2019-02-15 Last update: 2019-02-19 19:12

Multiarch hinter reports 1 issue(s) low

There are issues with the multiarch metadata for this package.

t-coffee-examples could be marked Multi-Arch: foreign

Created: 2016-09-14 Last update: 2019-02-20 04:16

1 ignored security issue in jessie low

There is 1 open security issue in jessie.

1 issue skipped by the security teams:

CVE-2015-8621: t-coffee before 11.00.8cbe486-2 allows local users to write to ~/.t_coffee globally.

Please fix it.

Created: 2015-12-23 Last update: 2019-02-15 14:10

Build log checks report 1 warning low

Build log checks report 1 warning

Created: 2017-10-26 Last update: 2017-10-26 07:23

testing migrations

excuses:
- Too young, only 5 of 10 days old
- Updating t-coffee fixes old bugs: #922149
- Piuparts tested OK - https://piuparts.debian.org/sid/source/t/t-coffee.html
- Required age reduced by 0 days because of autopkgtest
- Not considered

news

[2019-02-15] Accepted t-coffee 12.00.7fb08c2-4 (source) into unstable (Andreas Tille)
[2019-02-12] Accepted t-coffee 12.00.7fb08c2-3 (source) into unstable (Andreas Tille)
[2019-02-07] t-coffee 12.00.7fb08c2-2 MIGRATED to testing (Debian testing watch)
[2019-02-04] Accepted t-coffee 12.00.7fb08c2-2 (source) into unstable (Liubov Chuprikova) (signed by: Andreas Tille)
[2018-12-17] Accepted t-coffee 12.00.7fb08c2-1 (source) into unstable (Andreas Tille)
[2018-10-24] t-coffee 11.00.8cbe486-8 MIGRATED to testing (Debian testing watch)
[2018-10-21] Accepted t-coffee 11.00.8cbe486-8 (source) into unstable (Liubov Chuprikova) (signed by: Andreas Tille)
[2018-09-24] Accepted t-coffee 11.00.8cbe486-7 (source) into unstable (Andreas Tille)
[2017-09-02] t-coffee 11.00.8cbe486-6 MIGRATED to testing (Debian testing watch)
[2017-08-28] Accepted t-coffee 11.00.8cbe486-6 (source) into unstable (Andreas Tille)
[2016-12-28] t-coffee 11.00.8cbe486-5 MIGRATED to testing (Debian testing watch)
[2016-12-17] Accepted t-coffee 11.00.8cbe486-5 (source) into unstable (Andreas Tille)
[2016-07-01] t-coffee 11.00.8cbe486-4 MIGRATED to testing (Debian testing watch)
[2016-06-25] Accepted t-coffee 11.00.8cbe486-4 (source amd64 all) into unstable (Canberk Koç) (signed by: Andreas Tille)
[2016-05-25] t-coffee 11.00.8cbe486-3 MIGRATED to testing (Debian testing watch)
[2016-05-19] Accepted t-coffee 11.00.8cbe486-3 (source) into unstable (Sascha Steinbiss) (signed by: Andreas Tille)
[2015-12-29] t-coffee 11.00.8cbe486-2 MIGRATED to testing (Debian testing watch)
[2015-12-23] Accepted t-coffee 11.00.8cbe486-2 (source amd64 all) into unstable (Andreas Tille)
[2014-08-30] t-coffee 11.00.8cbe486-1 MIGRATED to testing (Britney)
[2014-08-19] Accepted t-coffee 11.00.8cbe486-1 (source amd64 all) into unstable (Andreas Tille)
[2013-12-08] t-coffee 10.00.r1613-1 MIGRATED to testing (Debian testing watch)
[2013-11-27] Accepted t-coffee 10.00.r1613-1 (source amd64 all) (Charles Plessy)
[2013-07-25] t-coffee 9.03.r1318-1 MIGRATED to testing (Debian testing watch)
[2013-07-14] Accepted t-coffee 9.03.r1318-1 (source amd64 all) (Charles Plessy)
[2012-03-12] t-coffee 9.02.r1228-2 MIGRATED to testing (Debian testing watch)
[2012-03-02] Accepted t-coffee 9.02.r1228-2 (source all amd64) (Charles Plessy)
[2012-02-27] Accepted t-coffee 9.02.r1228-1 (source all amd64) (Charles Plessy)
[2011-08-27] t-coffee 8.99-1 MIGRATED to testing (Debian testing watch)
[2011-06-21] Accepted t-coffee 8.99-1 (source all amd64) (Charles Plessy)
[2010-07-05] t-coffee 8.84-1 MIGRATED to testing (Debian testing watch)

1
2

bugs [bug history graph]

all: 0

links

homepage
lintian
buildd: logs, checks, clang, reproducibility
popcon
debci
browse source code
edit tags
security tracker
screenshots

ubuntu

[Information about Ubuntu for Debian Developers]

version: 12.00.7fb08c2-4

Debian Package Tracker — Copyright 2013-2018 The Distro Tracker Developers

Report problems to the tracker.debian.org pseudo-package in the Debian BTS.

Documentation — Bugs — Git Repository — Contributing