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sortmerna

tool for filtering, mapping and OTU-picking NGS reads

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general

source: sortmerna (main)
version: 7.1.0-1
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Étienne Mollier [DMD]
arch: any
std-ver: 4.7.4
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 2.1-5
oldstable: 4.3.6-2
stable: 4.3.7-2
testing: 4.3.7-3
unstable: 7.1.0-1

versioned links

2.1-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
4.3.6-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
4.3.7-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
4.3.7-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
7.1.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

sortmerna

action needed

RM: This package has been requested to be removed. normal

This package has been requested to be removed. This means that, when this request gets processed by an ftp-master, this package will no longer be in unstable, and will automatically be removed from testing too afterwards. If for some reason you want keep this package in unstable, please discuss so in the bug. Please see bug number #1151372 for more information.

Created: 2026-10-20 Last update: 2026-10-20 11:53

debian/patches: 3 patches to forward upstream low

Among the 3 debian patches available in version 7.1.0-1 of the package, we noticed the following issues:

3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-10-20 09:00

testing migrations

excuses:
- Migration status for sortmerna (4.3.7-3 to 7.1.0-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ sortmerna unsatisfiable Build-Depends(-Arch) on i386: architecture-is-64-bit
- ∙ ∙ sortmerna unsatisfiable Build-Depends(-Arch) on i386: libbbhash-dev
- ∙ ∙ Missing build on i386
- ∙ ∙ Autopkgtest deferred on i386: missing arch:i386 build
- ∙ ∙ Autopkgtest for sortmerna/7.1.0-1: amd64: Pass, arm64: Failed (not a regression) ♻ (reference ♻), ppc64el: Pass, riscv64: Failed (not a regression) ♻ (reference ♻)
- ∙ ∙ Lintian check waiting for test results on i386 - info
- ∙ ∙ Reproducibility check deferred on i386: missing builds - info
- ∙ ∙ Too young, only 4 of 5 days old
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/sortmerna.html
- ∙ ∙ Reproduced on amd64 - info
- ∙ ∙ Reproduced on arm64 - info
- ∙ ∙ Reproduced on armhf - info
- Not considered

news

[2026-10-19] Accepted sortmerna 7.1.0-1 (source) into unstable (Andreas Tille)
[2025-10-11] sortmerna 4.3.7-3 MIGRATED to testing (Debian testing watch)
[2025-10-06] sortmerna REMOVED from testing (Debian testing watch)
[2025-10-05] Accepted sortmerna 4.3.7-3 (source) into unstable (Étienne Mollier)
[2024-12-17] sortmerna 4.3.7-2 MIGRATED to testing (Debian testing watch)
[2024-12-11] Accepted sortmerna 4.3.7-2 (source) into unstable (Andreas Tille)
[2024-06-08] sortmerna 4.3.7-1 MIGRATED to testing (Debian testing watch)
[2024-06-01] Accepted sortmerna 4.3.7-1 (source) into unstable (Étienne Mollier)
[2023-09-12] sortmerna 4.3.6-3 MIGRATED to testing (Debian testing watch)
[2023-09-06] Accepted sortmerna 4.3.6-3 (source) into unstable (Étienne Mollier)
[2023-01-13] sortmerna 4.3.6-2 MIGRATED to testing (Debian testing watch)
[2023-01-07] Accepted sortmerna 4.3.6-2 (source) into unstable (Étienne Mollier)
[2022-11-29] Accepted sortmerna 4.3.6-1 (source) into unstable (Andreas Tille)
[2022-02-16] Accepted sortmerna 4.3.4-1 (source) into experimental (Andreas Tille)
[2022-02-02] Accepted sortmerna 4.3.4-1 (source) into experimental (Andreas Tille)
[2020-03-23] sortmerna 2.1-5 MIGRATED to testing (Debian testing watch)
[2020-03-20] Accepted sortmerna 2.1-5 (source) into unstable (Pranav Ballaney) (signed by: Andreas Tille)
[2020-01-08] sortmerna 2.1-4 MIGRATED to testing (Debian testing watch)
[2019-12-25] Accepted sortmerna 2.1-4 (source) into unstable (Andreas Tille)
[2018-10-15] sortmerna 2.1-3 MIGRATED to testing (Debian testing watch)
[2018-10-09] Accepted sortmerna 2.1-3 (source) into unstable (Andreas Tille)
[2017-09-30] sortmerna 2.1-2 MIGRATED to testing (Debian testing watch)
[2017-09-25] Accepted sortmerna 2.1-2 (source amd64) into unstable (Andreas Tille)
[2016-03-16] sortmerna 2.1-1 MIGRATED to testing (Debian testing watch)
[2016-03-10] Accepted sortmerna 2.1-1 (source) into unstable (Andreas Tille)
[2015-09-07] sortmerna 2.0-1 MIGRATED to testing (Britney)
[2015-08-27] Accepted sortmerna 2.0-1 (source amd64) into unstable, unstable (Andreas Tille)

bugs [bug history graph]

all: 0

links

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buildd: logs, reproducibility, cross
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ubuntu

[Information about Ubuntu for Debian Developers]

version: 4.3.7-3build1

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