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cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

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general
  • source: cufflinks (non-free)
  • version: 2.2.1+dfsg.1-10
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Alexandre Mestiashvili [DMD] – Charles Plessy [DMD]
  • arch: any
  • std-ver: 4.7.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.2.1+dfsg.1-8
  • oldstable: 2.2.1+dfsg.1-9
  • stable: 2.2.1+dfsg.1-10
  • unstable: 2.2.1+dfsg.1-10
versioned links
  • 2.2.1+dfsg.1-8: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.2.1+dfsg.1-9: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.2.1+dfsg.1-10: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • cufflinks
action needed
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2025-10-05 Last update: 2025-12-14 08:00
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 2.2.1+dfsg.1-11, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit c7ae4c824b037c1c633f6ecc7e97542de45b06a5
Author: Andreas Tille <tille@debian.org>
Date:   Mon Dec 8 21:12:52 2025 +0100

    d/watch:
       - version=5
       - Fetch latest Git commit

commit 43e1c6851f997784dba37a0fb8dbee9b26463a15
Author: Andreas Tille <tille@debian.org>
Date:   Mon Dec 8 16:43:24 2025 +0100

    Another chunk of patches

commit 04de8053a6ef61757be1e5b52de53153de58c8eb
Author: Andreas Tille <tille@debian.org>
Date:   Sun Dec 7 16:52:58 2025 +0100

    -std=gnu11 (or -std=c11) seems to accept old function definitions but there are also issues (reference to 'byte' is ambiguous)

commit 903b0575978bfd2aecc2881a0de1d209dfdfd293
Author: Andreas Tille <tille@debian.org>
Date:   Sun Dec 7 16:52:17 2025 +0100

    More old style function definitions

commit f196f2715ade8164355cc2ba8db1f12340fec5bc
Author: Andreas Tille <tille@debian.org>
Date:   Sun Dec 7 10:18:34 2025 +0100

    More patches, not finalised

commit 7ea3c42d462f726315186475784a9b17dc0e38ce
Author: Andreas Tille <tille@debian.org>
Date:   Sat Dec 6 12:14:34 2025 +0100

    Start patching to build with gcc15 - more work needed
Created: 2025-12-06 Last update: 2025-12-08 21:02
debian/patches: 13 patches to forward upstream low

Among the 13 debian patches available in version 2.2.1+dfsg.1-10 of the package, we noticed the following issues:

  • 13 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2024-08-28 10:40
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.7.0).
Created: 2025-02-21 Last update: 2025-02-27 13:25
testing migrations
  • excuses:
    • Migration status for cufflinks (- to 2.2.1+dfsg.1-10): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating cufflinks would introduce bugs in testing: #1114084
    • Additional info (not blocking):
    • ∙ ∙ Piuparts can't test cufflinks (not a blocker) - (no link yet)
    • ∙ ∙ 473 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2025-10-06] cufflinks REMOVED from testing (Debian testing watch)
  • [2024-09-02] cufflinks 2.2.1+dfsg.1-10 MIGRATED to testing (Debian testing watch)
  • [2024-08-27] Accepted cufflinks 2.2.1+dfsg.1-10 (source) into unstable (Étienne Mollier)
  • [2021-11-13] cufflinks 2.2.1+dfsg.1-9 MIGRATED to testing (Debian testing watch)
  • [2021-11-08] Accepted cufflinks 2.2.1+dfsg.1-9 (source) into unstable (Andreas Tille)
  • [2020-08-07] cufflinks 2.2.1+dfsg.1-8 MIGRATED to testing (Debian testing watch)
  • [2020-08-02] Accepted cufflinks 2.2.1+dfsg.1-8 (source amd64) into unstable (Andreas Tille)
  • [2020-02-27] cufflinks 2.2.1+dfsg.1-7 MIGRATED to testing (Debian testing watch)
  • [2020-02-21] Accepted cufflinks 2.2.1+dfsg.1-7 (source) into unstable (Gianfranco Costamagna)
  • [2020-02-21] Accepted cufflinks 2.2.1+dfsg.1-6 (source) into unstable (Gianfranco Costamagna)
  • [2020-02-16] cufflinks 2.2.1+dfsg.1-5 MIGRATED to testing (Debian testing watch)
  • [2020-02-08] Accepted cufflinks 2.2.1+dfsg.1-5 (source) into unstable (Alexandre Mestiashvili)
  • [2019-08-26] cufflinks 2.2.1+dfsg.1-4 MIGRATED to testing (Debian testing watch)
  • [2019-08-20] Accepted cufflinks 2.2.1+dfsg.1-4 (source) into unstable (Alexandre Mestiashvili)
  • [2018-10-25] cufflinks 2.2.1+dfsg.1-3 MIGRATED to testing (Debian testing watch)
  • [2018-10-18] Accepted cufflinks 2.2.1+dfsg.1-3 (source) into unstable (Andreas Tille)
  • [2017-11-07] cufflinks 2.2.1+dfsg.1-2 MIGRATED to testing (Debian testing watch)
  • [2017-11-02] Accepted cufflinks 2.2.1+dfsg.1-2 (source amd64) into unstable (Alexandre Mestiashvili)
  • [2017-09-11] cufflinks 2.2.1+dfsg.1-1 MIGRATED to testing (Debian testing watch)
  • [2017-09-05] Accepted cufflinks 2.2.1+dfsg.1-1 (source amd64) into unstable (Alexandre Mestiashvili)
  • [2016-08-22] cufflinks 2.2.1-3 MIGRATED to testing (Debian testing watch)
  • [2016-08-16] Accepted cufflinks 2.2.1-3 (source amd64) into unstable (Andreas Tille)
  • [2016-07-18] cufflinks 2.2.1-2 MIGRATED to testing (Debian testing watch)
  • [2016-07-12] Accepted cufflinks 2.2.1-2 (source amd64) into unstable (Andreas Tille)
  • [2015-09-29] cufflinks REMOVED from testing (Britney)
  • [2014-05-22] cufflinks 2.2.1-1 MIGRATED to testing (Debian testing watch)
  • [2014-05-16] Accepted cufflinks 2.2.1-1 (source amd64) (Alexandre Mestiashvili)
  • [2014-04-17] cufflinks 2.2.0-1 MIGRATED to testing (Debian testing watch)
  • [2014-04-11] Accepted cufflinks 2.2.0-1 (source amd64) (Alexandre Mestiashvili)
  • [2013-11-18] cufflinks 2.1.1-4 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 2
  • RC: 1
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
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  • version: 2.2.1+dfsg.1-10

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