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r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R

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general

source: r-bioc-scater (main)
version: 1.34.1+ds-2
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Steffen Moeller [DMD]
arch: all
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.18.3+ds-4
oldstable: 1.26.1+ds-1
stable: 1.34.1+ds-1
unstable: 1.34.1+ds-2

versioned links

1.18.3+ds-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.26.1+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.34.1+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.34.1+ds-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-scater

action needed

Debci reports failed tests high

unstable: tmpfail (log)
The tests ran in 0:00:05
Last run: 2026-03-07T08:02:34.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:17
Last run: 2025-11-27T17:13:19.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:03:00
Last run: 2025-11-08T19:39:15.000Z
Previous status: unknown

Created: 2025-11-27 Last update: 2026-03-16 17:32

A new upstream version is available: 1.38.0 high

A new upstream version 1.38.0 is available, you should consider packaging it.

Created: 2025-11-26 Last update: 2026-03-16 14:30

debian/patches: 1 patch to forward upstream low

Among the 1 debian patch available in version 1.34.1+ds-2 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-03-15 19:02

testing migrations

excuses:
- Migrates after: r-bioc-beachmat, r-bioc-biocgenerics, r-bioc-biocneighbors, r-bioc-biocparallel, r-bioc-biocsingular, r-bioc-delayedarray, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-scuttle, r-bioc-singlecellexperiment, r-bioc-sparsearray, r-bioc-summarizedexperiment, r-cran-uwot
- Migration status for r-bioc-scater (- to 1.34.1+ds-2): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Autopkgtest for r-bioc-scater/1.34.1+ds-2: amd64: Pass, arm64: Pass, ppc64el: Test triggered, riscv64: No tests, superficial or marked flaky ♻, s390x: Test triggered
- ∙ ∙ Too young, only 1 of 5 days old
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-beachmat (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-biocneighbors (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-biocparallel (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-biocsingular (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-delayedarray (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-matrixgenerics
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-s4vectors (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-scuttle (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-singlecellexperiment
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-sparsearray (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-bioc-summarizedexperiment
- ∙ ∙ Build-Depends(-Arch): r-bioc-scater r-cran-uwot (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-beachmat (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-biocneighbors (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-biocparallel (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-biocsingular (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-delayedarray (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-matrixgenerics
- ∙ ∙ Depends: r-bioc-scater r-bioc-s4vectors (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-scuttle (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-singlecellexperiment
- ∙ ∙ Depends: r-bioc-scater r-bioc-sparsearray (not considered)
- ∙ ∙ Depends: r-bioc-scater r-bioc-summarizedexperiment
- ∙ ∙ Depends: r-bioc-scater r-cran-uwot (not considered)
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-scater.html
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Reproduced on amd64
- ∙ ∙ Reproduced on arm64
- ∙ ∙ Reproduced on armhf
- ∙ ∙ Reproduced on i386
- ∙ ∙ Reproduced on ppc64el
- Not considered

news

[2026-03-15] Accepted r-bioc-scater 1.34.1+ds-2 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-scater REMOVED from testing (Debian testing watch)
[2025-03-15] r-bioc-scater 1.34.1+ds-1 MIGRATED to testing (Debian testing watch)
[2025-03-10] Accepted r-bioc-scater 1.34.1+ds-1 (source) into unstable (Charles Plessy)
[2025-02-01] r-bioc-scater 1.34.0+ds-2 MIGRATED to testing (Debian testing watch)
[2025-01-13] Accepted r-bioc-scater 1.34.0+ds-2 (source) into unstable (Michael R. Crusoe)
[2024-11-29] Accepted r-bioc-scater 1.34.0+ds-1 (source) into experimental (Michael R. Crusoe)
[2024-11-18] r-bioc-scater REMOVED from testing (Debian testing watch)
[2024-09-10] r-bioc-scater 1.32.1+ds-1 MIGRATED to testing (Debian testing watch)
[2024-08-18] Accepted r-bioc-scater 1.32.1+ds-1 (source) into unstable (Michael R. Crusoe)
[2024-07-30] Accepted r-bioc-scater 1.32.1+ds-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-scater 1.32.0+ds-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-scater REMOVED from testing (Debian testing watch)
[2023-12-24] r-bioc-scater 1.30.1+ds-2 MIGRATED to testing (Debian testing watch)
[2023-12-19] Accepted r-bioc-scater 1.30.1+ds-2 (source) into unstable (Andreas Tille)
[2023-12-01] Accepted r-bioc-scater 1.30.1+ds-1 (source) into unstable (Andreas Tille)
[2023-08-06] Accepted r-bioc-scater 1.28.0+ds-1 (source) into unstable (Andreas Tille)
[2023-07-09] r-bioc-scater REMOVED from testing (Debian testing watch)
[2022-12-05] r-bioc-scater 1.26.1+ds-1 MIGRATED to testing (Debian testing watch)
[2022-11-28] Accepted r-bioc-scater 1.26.1+ds-1 (source) into unstable (Andreas Tille)
[2022-11-28] r-bioc-scater REMOVED from testing (Debian testing watch)
[2022-06-02] r-bioc-scater 1.24.0+ds-1 MIGRATED to testing (Debian testing watch)
[2022-05-31] Accepted r-bioc-scater 1.24.0+ds-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-scater 1.22.0+ds-2 MIGRATED to testing (Debian testing watch)
[2022-05-19] Accepted r-bioc-scater 1.22.0+ds-2 (source) into unstable (Nilesh Patra)
[2021-12-03] r-bioc-scater 1.22.0+ds-1 MIGRATED to testing (Debian testing watch)
[2021-11-26] Accepted r-bioc-scater 1.22.0+ds-1 (source) into unstable (Andreas Tille)
[2021-09-29] r-bioc-scater 1.20.1+ds-1 MIGRATED to testing (Debian testing watch)
[2021-09-12] Accepted r-bioc-scater 1.20.1+ds-1 (source) into unstable (Andreas Tille)
[2021-02-09] r-bioc-scater 1.18.3+ds-4 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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version: 1.34.1+ds-1

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