r-bioc-summarizedexperiment - Debian Package Tracker

general

source: r-bioc-summarizedexperiment (main)
version: 1.36.0+dfsg-3
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Charles Plessy [DMD]
arch: all
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.20.0+dfsg-1
oldstable: 1.28.0+dfsg-1
stable: 1.36.0+dfsg-2
unstable: 1.36.0+dfsg-3

versioned links

1.20.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.28.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.36.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.36.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-summarizedexperiment

action needed

1 binary package has unsatisfiable dependencies high

The dependencies of r-bioc-summarizedexperiment=1.36.0+dfsg-3 cannot be satisfied in unstable on amd64 because: unsatisfied dependency on r-api-bioc-3.20

Created: 2026-07-11 Last update: 2026-07-27 03:30

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:01:54
Last run: 2026-05-27T20:52:25.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:32
Last run: 2025-11-27T19:31:37.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:01:23
Last run: 2026-07-17T18:14:09.000Z
Previous status: unknown

Created: 2025-11-27 Last update: 2026-07-27 03:00

Problems while searching for a new upstream version high

uscan had problems while searching for a new upstream version:

In watchfile debian/watch, reading webpage
  https://www.bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html failed: 500 read timeout

Created: 2026-07-25 Last update: 2026-07-26 22:03

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2026-04-13 Last update: 2026-07-27 02:32

debian/patches: 1 patch to forward upstream low

Among the 1 debian patch available in version 1.36.0+dfsg-3 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-03-15 19:02

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.3).

Created: 2026-03-31 Last update: 2026-03-31 15:01

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.23. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migrates after: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-delayedarray, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-matrixgenerics, r-bioc-s4arrays, r-bioc-s4vectors
- Migration status for r-bioc-summarizedexperiment (- to 1.36.0+dfsg-3): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ r-bioc-summarizedexperiment/amd64 has unsatisfiable dependency
- ∙ ∙ r-bioc-summarizedexperiment/arm64 has unsatisfiable dependency
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-biobase
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-delayedarray (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-genomeinfodb (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-genomicranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-iranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-matrixgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-s4arrays (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-summarizedexperiment r-bioc-s4vectors
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-summarizedexperiment.html
- ∙ ∙ Autopkgtest skipped on amd64: not installable
- ∙ ∙ Autopkgtest skipped on arm64: not installable
- ∙ ∙ Autopkgtest skipped on armhf: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on loong64: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on ppc64el: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on riscv64: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
- ∙ ∙ Reproduced on amd64 - info
- ∙ ∙ Reproduced on arm64 - info
- ∙ ∙ Reproduced on armhf - info
- ∙ ∙ Reproduced on i386 - info
- ∙ ∙ 134 days old (needed 5 days)
- Not considered

news

[rss feed]

[2026-03-15] Accepted r-bioc-summarizedexperiment 1.36.0+dfsg-3 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-summarizedexperiment REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-summarizedexperiment 1.36.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2025-01-21] r-bioc-summarizedexperiment REMOVED from testing (Debian testing watch)
[2025-01-12] Accepted r-bioc-summarizedexperiment 1.36.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2024-11-29] Accepted r-bioc-summarizedexperiment 1.36.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-09-10] r-bioc-summarizedexperiment 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-08-17] Accepted r-bioc-summarizedexperiment 1.34.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-07-23] Accepted r-bioc-summarizedexperiment 1.34.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-summarizedexperiment 1.34.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-summarizedexperiment REMOVED from testing (Debian testing watch)
[2023-12-17] r-bioc-summarizedexperiment 1.32.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-11-30] Accepted r-bioc-summarizedexperiment 1.32.0+dfsg-1 (source) into unstable (Charles Plessy)
[2023-08-19] r-bioc-summarizedexperiment 1.30.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-26] Accepted r-bioc-summarizedexperiment 1.30.2+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-summarizedexperiment REMOVED from testing (Debian testing watch)
[2022-12-05] r-bioc-summarizedexperiment 1.28.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-summarizedexperiment 1.28.0+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-summarizedexperiment 1.26.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-15] Accepted r-bioc-summarizedexperiment 1.26.1+dfsg-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-summarizedexperiment 1.24.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-11-25] Accepted r-bioc-summarizedexperiment 1.24.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-09-29] r-bioc-summarizedexperiment 1.22.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-09-06] Accepted r-bioc-summarizedexperiment 1.22.0+dfsg-1 (source) into unstable (Andreas Tille)
[2020-11-23] r-bioc-summarizedexperiment 1.20.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2020-11-03] Accepted r-bioc-summarizedexperiment 1.20.0+dfsg-1 (source) into unstable (Andreas Tille)
[2020-07-18] r-bioc-summarizedexperiment 1.18.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2020-07-15] Accepted r-bioc-summarizedexperiment 1.18.2+dfsg-1 (source) into unstable (Dylan Aïssi)
[2020-05-29] r-bioc-summarizedexperiment 1.18.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2020-05-19] Accepted r-bioc-summarizedexperiment 1.18.1+dfsg-1 (source) into unstable (Dylan Aïssi)

bugs [bug history graph]

all: 0

links

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ubuntu

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version: 1.36.0+dfsg-3